Blue Dream

RSP 11227

Grower: Los Suenos Farms

General Information

Sample Name
Blue Dream 1
Accession Date
July 7, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0344
male female RSP11227

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
FAD2-2

UniProt

c.64G>T p.Ala22Ser missense variant moderate contig83 1803305

IGV: Start, Jump

C/A
NGS:
0.048
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.000 Blue Dream (RSP11005)
  2. 0.001 Blue Dream (RSP11342)
  3. 0.001 Blue Dream (RSP11017)
  4. 0.001 Blue Dream (RSP11032)
  5. 0.002 Blue Dream (RSP11033)
  6. 0.002 Blue Dream (RSP11008)
  7. 0.002 Blue Dream (RSP11012)
  8. 0.002 Snoops Dream (RSP11031)
  9. 0.003 Snoops Dream (RSP11003)
  10. 0.003 Blue Dream (RSP11009)
  11. 0.003 Blue Dream (RSP11006)
  12. 0.004 Blue Dream (RSP11004)
  13. 0.004 Blue Dream (RSP11007)
  14. 0.005 Super Blue Dream (RSP11011)
  15. 0.010 Blue Dream (RSP11010)
  16. 0.184 Serious Happiness (RSP10763)
  17. 0.194 UP Sunrise (RSP10989)
  18. 0.198 Golden Goat 2 (RSP10991)
  19. 0.202 OR (RSP10940)
  20. 0.206 Italian Kiss (RSP10990)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.001 Blue Dream (RSP11033)
  2. 0.194 Golden Goat 2 (RSP10991)
  3. 0.197 UP Sunrise (RSP10989)
  4. 0.215 Italian Kiss (RSP11034)
  5. 0.235 Gold Cracker (RSP11048)
  6. 0.235 CST (RSP11002)
  7. 0.239 RKM-2018-009 (RSP11100)
  8. 0.246 RKM-2018-027 (RSP11119)
  9. 0.253 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.257 RKM-2018-003 (RSP11094)
  11. 0.267 RKM-2018-018 (RSP11110)
  12. 0.268 Durban Poison (RSP11014)
  13. 0.273 RKM-2018-020 (RSP11112)
  14. 0.275 RKM-2018-006 (RSP11097)
  15. 0.279 Sour Raspberry (RSP10551)
  16. 0.281 RKM-2018-029 (RSP11121)
  17. 0.281 RKM-2018-033 (RSP11125)
  18. 0.284 Blueberry Cheesecake (RSP10684)
  19. 0.286 QUEEN JESUS (RSP10105)
  20. 0.288 JL yellow (RSP11075)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.476 Cherry Blossom (RSP11311)
  2. 0.443 Cherry Blossom (RSP11312)
  3. 0.431 Cherry Blossom (RSP11298)
  4. 0.428 Cherry Blossom (RSP11328)
  5. 0.425 Cherry Blossom (RSP11314)
  6. 0.423 Cherry Blossom (RSP11323)
  7. 0.422 80E (RSP11211)
  8. 0.421 80E (RSP11213)
  9. 0.421 CS (RSP11208)
  10. 0.420 Cherry Blossom (RSP11308)
  11. 0.420 Carmaleonte (RSP11207)
  12. 0.417 Cherry Blossom (RSP11334)
  13. 0.416 Cherry Blossom (RSP11335)
  14. 0.416 Feral (RSP11205)
  15. 0.413 Unknown- Cherry Wine - 002 (RSP11269)
  16. 0.411 Cherry Blossom (RSP11300)
  17. 0.411 Kush Hemp E1 (RSP11128)
  18. 0.411 Unknown- Cherry Wine - 003 (RSP11270)
  19. 0.410 Cherry Blossom (RSP11317)
  20. 0.406 80E (RSP11212)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.411 Kush Hemp E1 (RSP11128)
  2. 0.405 Cbot-2019-005 (RSP11133)
  3. 0.385 Santhica27 (RSP11047)
  4. 0.380 Feral (RSP10890)
  5. 0.376 RKM-2018-002 (RSP11093)
  6. 0.375 RKM-2018-026 (RSP11118)
  7. 0.372 RKM-2018-019 (RSP11111)
  8. 0.371 Monoica (RSP10241)
  9. 0.362 Ivory (RSP10668)
  10. 0.362 RKM-2018-022 (RSP11114)
  11. 0.362 Carmagnola (RSP11037)
  12. 0.359 Cherry (RSP11142)
  13. 0.357 Skywalker OG (RSP10837)
  14. 0.355 Fedora 17 (RSP10661)
  15. 0.354 Cherry (RSP11143)
  16. 0.353 KYRG-11 (RSP11051)
  17. 0.353 Futura 75 (RSP10664)
  18. 0.351 Lovrin (RSP10658)
  19. 0.348 Kyrgyz Gold (RSP11054)
  20. 0.346 RKM-2018-034 (RSP11126)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
99
Concordance:
98

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
f467e27d4bc6a7c8cd456da80b57b8345a9c0e795e170aa6c82fb69e2fa91d27
Stamping Certificate
Download PDF (853.9 KB)
SHASUM Hash
9fd96d236f48d28e4fb149627a1eb40374d645d628d63f7af1a47a116e08c27a
QR code for RSP11227

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