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RSP 11231

Grower: Los Suenos Farms

General Information

Sample Name
Pheno 576
Accession Date
July 7, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.61%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0358
male female RSP11231

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1944395

IGV: Start, Jump

G/A
NGS:
0.015
C90:
0.598
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.781T>A p.Leu261Ile missense variant moderate contig700 1944609

IGV: Start, Jump

A/T
NGS:
0.026
C90:
0.574
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.188T>A p.Ile63Asn missense variant moderate contig700 1945202

IGV: Start, Jump

A/T
NGS:
0.061
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.153 Pure Power Plant (RSP11265)
  2. 0.157 Hermaphrodite ResearchSample2 (RSP11050)
  3. 0.165 RKM-2018-008 (RSP11099)
  4. 0.168 The Gift (RSP10988)
  5. 0.171 RKM-2018-034 (RSP11126)
  6. 0.172 GMO x Poison Momosa (RSP12500)
  7. 0.176 RKM-2018-017 (RSP11109)
  8. 0.177 RKM-2018-021 (RSP11113)
  9. 0.178 GMO x The inhaler (RSP12508)
  10. 0.178 RKM-2018-032 (RSP11124)
  11. 0.179 Peanut Butter Breath (RSP11640)
  12. 0.179 Hermaphrodite ResearchSample2 (RSP11043)
  13. 0.179 Fatso (RSP11741)
  14. 0.182 GMO (RSP12091)
  15. 0.184 Deadhead OG (RSP11463)
  16. 0.188 GMO x Poison Momosa (RSP12626)
  17. 0.188 SFVxTK (RSP11072)
  18. 0.190 RKM-2018-013 (RSP11104)
  19. 0.191 Casco Kush (RSP11167)
  20. 0.192 NSPM x NSPM (RSP11487)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.176 Hermaphrodite ResearchSample2 (RSP11050)
  2. 0.176 RKM-2018-032 (RSP11124)
  3. 0.177 The Gift (RSP10988)
  4. 0.179 RKM-2018-034 (RSP11126)
  5. 0.185 Skywalker OG (RSP10837)
  6. 0.208 RKM-2018-026 (RSP11118)
  7. 0.229 Pie Hoe (RSP11073)
  8. 0.239 Blueberry Cheesecake (RSP10680)
  9. 0.245 Blueberry Cheesecake (RSP10684)
  10. 0.252 RKM-2018-002 (RSP11093)
  11. 0.258 RKM-2018-033 (RSP11125)
  12. 0.270 RKM-2018-020 (RSP11112)
  13. 0.272 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.273 Kimbo Slice (RSP10997)
  15. 0.275 Durban Poison (RSP11014)
  16. 0.279 RKM-2018-009 (RSP11100)
  17. 0.282 RKM-2018-004 (RSP11096)
  18. 0.282 Recon (RSP10755)
  19. 0.294 Liberty Haze (RSP11000)
  20. 0.302 Golden Goat 2 (RSP10991)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.475 Cherry Blossom (RSP11318)
  2. 0.449 Cherry Blossom (RSP11306)
  3. 0.448 Wife (RSP11148)
  4. 0.447 Tanao Sri -46- (RSP11486)
  5. 0.446 Cherry Blossom (RSP11325)
  6. 0.445 Northern Skunk (RSP11456)
  7. 0.443 Cherry Blossom (RSP11323)
  8. 0.441 Cherry Blossom (RSP11300)
  9. 0.434 Cherry Blossom (RSP11301)
  10. 0.429 Cherry Blossom (RSP11329)
  11. 0.428 Cherry Blossom (RSP11328)
  12. 0.427 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  13. 0.426 AVIDEKEL 2 0 (RSP11174)
  14. 0.426 Cherry Blossom (RSP11322)
  15. 0.425 80E (RSP11213)
  16. 0.421 Unknown--Cherry Wine---001- (RSP11268)
  17. 0.419 JL yellow (RSP11075)
  18. 0.418 Alpine Rocket (SRR14708266)
  19. 0.417 Gorilla Glue (RSP11493)
  20. 0.414 Cold Weather Cherry (RSP11414)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.426 JL yellow (RSP11075)
  2. 0.398 Cherry (RSP11142)
  3. 0.386 Cherry (RSP11143)
  4. 0.386 Cbot-2019-001 (RSP11129)
  5. 0.384 Cbot-2019-005 (RSP11133)
  6. 0.378 Carmagnola (RSP11037)
  7. 0.376 Lovrin (RSP10658)
  8. 0.376 Futura 75 (RSP10664)
  9. 0.374 RKM-2018-028 (RSP11120)
  10. 0.373 USO 31 (RSP10981)
  11. 0.370 Blueberry Cheesecake (RSP10672)
  12. 0.369 RKM-2018-006 (RSP11097)
  13. 0.369 RKM-2018-023 (RSP11115)
  14. 0.368 RKM-2018-031 (RSP11123)
  15. 0.368 Feral (RSP10890)
  16. 0.363 Monoica (RSP10241)
  17. 0.358 Italian Kiss (RSP11034)
  18. 0.358 Black Beauty (RSP11035)
  19. 0.357 Santhica27 (RSP11047)
  20. 0.357 RKM-2018-027 (RSP11119)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347089
Overlapping SNPs:
95
Concordance:
68

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
3f8333baa4fa0991ef96d9647b077b48308df73e8431b1e0b1368e528c101ce6
Stamping Certificate
Download PDF (858.7 KB)
SHASUM Hash
8dd2d09b097b027e593ba24f2c2d7f200a905f663eeb39622bc8d7598047b2b3
QR code for RSP11231

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