MENDO BREATH

RSP 11242

Grower: Strong Agronomy

General Information

Sample Name
MENDO-H3
Accession Date
July 21, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.19%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0533
male female RSP11242

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1124G>C p.Arg375Thr missense variant moderate contig700 1950514

IGV: Start, Jump

C/G
NGS:
0.015
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.1105C>G p.Pro369Ala missense variant moderate contig700 1950533

IGV: Start, Jump

G/C
NGS:
0.013
C90:
0.000
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.001 Mendo Breath (RSP11747)
  2. 0.197 Peanut Butter Breath (RSP11640)
  3. 0.201 Gorilla Cookies (RSP11231)
  4. 0.207 RKM-2018-034 (RSP11126)
  5. 0.215 GMO x Poison Momosa (RSP12500)
  6. 0.215 JABBA S STASH (RSP11348)
  7. 0.215 Pure Power Plant (RSP11265)
  8. 0.216 Hermaphrodite ResearchSample2 (RSP11050)
  9. 0.217 GMO x Poison Momosa (RSP12626)
  10. 0.217 GMO x The inhaler (RSP12508)
  11. 0.222 Garlic (RSP11341)
  12. 0.222 RKM-2018-008 (RSP11099)
  13. 0.228 The Gift (RSP10988)
  14. 0.229 GMO (RSP12091)
  15. 0.233 Hermaphrodite ResearchSample2 (RSP11043)
  16. 0.234 ILM (RSP12623)
  17. 0.236 Deadhead OG (RSP11463)
  18. 0.236 Domnesia (RSP11184)
  19. 0.239 JL Cross 5 (RSP11506)
  20. 0.240 GMO x Zkittlez #43 (RSP11976)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.209 RKM-2018-034 (RSP11126)
  2. 0.223 Hermaphrodite ResearchSample2 (RSP11050)
  3. 0.231 The Gift (RSP10988)
  4. 0.260 Skywalker OG (RSP10837)
  5. 0.261 RKM-2018-019 (RSP11111)
  6. 0.273 Pie Hoe (RSP11073)
  7. 0.274 Recon (RSP10755)
  8. 0.276 Blueberry Cheesecake (RSP10684)
  9. 0.277 RKM-2018-026 (RSP11118)
  10. 0.278 RKM-2018-032 (RSP11124)
  11. 0.278 RKM-2018-004 (RSP11096)
  12. 0.284 Tygra (RSP10667)
  13. 0.286 RKM-2018-002 (RSP11093)
  14. 0.288 RKM-2018-022 (RSP11114)
  15. 0.289 Blueberry Cheesecake (RSP10680)
  16. 0.293 Kimbo Slice (RSP10997)
  17. 0.296 RKM-2018-029 (RSP11121)
  18. 0.304 Durban Poison (RSP11014)
  19. 0.305 Golden Goat 2 (RSP10991)
  20. 0.306 Ivory (RSP10668)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.455 Cherry Blossom (RSP11318)
  2. 0.449 Cherry Blossom (RSP11301)
  3. 0.448 Tanao Sri -46- (RSP11486)
  4. 0.446 Cherry Blossom (RSP11328)
  5. 0.441 Cherry Blossom (RSP11300)
  6. 0.441 Cherry Blossom (RSP11323)
  7. 0.436 AVIDEKEL 2 0 (RSP11174)
  8. 0.436 Cherry Blossom (RSP11325)
  9. 0.428 Cherry Blossom (RSP11306)
  10. 0.425 Cherry Blossom (RSP11309)
  11. 0.420 Wife (RSP11148)
  12. 0.411 Unknown--Cherry Wine---001- (RSP11268)
  13. 0.410 JL x NSPM1 4 (RSP11482)
  14. 0.408 Cherry Blossom (RSP11322)
  15. 0.408 Ringo s Gift -Katie s Cut- (RSP11624)
  16. 0.407 WO DC (RSP11413)
  17. 0.405 Cherry Blossom (RSP11312)
  18. 0.403 Cherry Blossom (RSP11314)
  19. 0.403 JL yellow (RSP11075)
  20. 0.403 Chematonic -Cannatonic x Chemdawg- (RSP11394)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.410 JL yellow (RSP11075)
  2. 0.406 Cbot-2019-005 (RSP11133)
  3. 0.396 Cbot-2019-001 (RSP11129)
  4. 0.389 Cherry (RSP11142)
  5. 0.383 RKM-2018-006 (RSP11097)
  6. 0.382 RKM-2018-027 (RSP11119)
  7. 0.363 Italian Kiss (RSP11034)
  8. 0.362 RKM-2018-018 (RSP11110)
  9. 0.362 Carmagnola (RSP10979)
  10. 0.362 RKM-2018-023 (RSP11115)
  11. 0.360 Skunk#18 (RSP11038)
  12. 0.357 Cbot-2019-004 (RSP11132)
  13. 0.355 Futura 75 (RSP10664)
  14. 0.354 Feral (RSP10890)
  15. 0.353 UP Sunrise (RSP10989)
  16. 0.350 Carmagnola (RSP11037)
  17. 0.350 Cherry (RSP11143)
  18. 0.348 Monoica (RSP10241)
  19. 0.346 Blue Dream (RSP11033)
  20. 0.346 RKM-2018-028 (RSP11120)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349364
Overlapping SNPs:
74
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
697315afde51a47ca1aa8ad7d4c920a57882d5af8e9bceb0d95a4403021e35cf
Stamping Certificate
Download PDF (858.5 KB)
SHASUM Hash
23e6c3fd881bf240c3f4320109450f478b9193cc9e357fae8a343b8154480033
QR code for RSP11242

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