UP Wendigo

RSP 11261

Grower: UP Farms

General Information

Sample Name
813.301
Accession Date
August 22, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.01%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0383
male female RSP11261

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.184 Jolly Rancher (RSP11639)
  2. 0.188 Golden Goat 2 (RSP10991)
  3. 0.210 UP Sunrise (RSP10989)
  4. 0.217 Super Lemon Haze (RSP11641)
  5. 0.217 Serious Happiness (RSP10763)
  6. 0.222 UnObtanium (RSP11611)
  7. 0.224 Lift (RSP11378)
  8. 0.225 Queen Dream CBG (RSP11287)
  9. 0.227 Banana Daddy 1 -Big- (RSP11496)
  10. 0.227 Super Blue Dream (RSP11011)
  11. 0.228 BLACK JACK (RSP11346)
  12. 0.231 Up Royale (RSP11257)
  13. 0.231 Black Jack (RSP10603)
  14. 0.232 Trump x Trump (RSP11466)
  15. 0.233 Blue Dream (RSP11017)
  16. 0.233 Domnesia (RSP11184)
  17. 0.233 Blue Dream (RSP11006)
  18. 0.234 Blue Dream (RSP11010)
  19. 0.235 Alaska USA (RSP11171)
  20. 0.236 Cheese (RSP10460)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.202 Golden Goat 2 (RSP10991)
  2. 0.217 UP Sunrise (RSP10989)
  3. 0.242 Durban Poison (RSP11014)
  4. 0.243 Gold Cracker (RSP11048)
  5. 0.263 RKM-2018-027 (RSP11119)
  6. 0.265 RKM-2018-023 (RSP11115)
  7. 0.270 Blue Dream (RSP11033)
  8. 0.272 Skunk#18 (RSP11038)
  9. 0.275 Blueberry Cheesecake (RSP10684)
  10. 0.277 RKM-2018-018 (RSP11110)
  11. 0.278 RKM-2018-028 (RSP11120)
  12. 0.278 RKM-2018-004 (RSP11096)
  13. 0.280 RKM-2018-029 (RSP11121)
  14. 0.280 RKM-2018-032 (RSP11124)
  15. 0.282 RKM-2018-003 (RSP11094)
  16. 0.285 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.286 RKM-2018-033 (RSP11125)
  18. 0.288 Cbot-2019-006 (RSP11134)
  19. 0.290 Liberty Haze (RSP11000)
  20. 0.295 RKM-2018-020 (RSP11112)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.479 Cherry Blossom (RSP11323)
  2. 0.473 Cherry Blossom (RSP11311)
  3. 0.468 Cherry Blossom (RSP11328)
  4. 0.454 Cherry Blossom (RSP11314)
  5. 0.452 Unknown--Cherry Wine---001- (RSP11268)
  6. 0.445 Unknown--Cherry Wine---003- (RSP11270)
  7. 0.444 Cherry Blossom (RSP11327)
  8. 0.439 Cherry Blossom (RSP11274)
  9. 0.437 Feral (RSP11205)
  10. 0.434 Cherry Blossom (RSP11306)
  11. 0.433 Cherry Blossom (RSP11309)
  12. 0.432 Feral (RSP10891)
  13. 0.432 Cherry Blossom (RSP11318)
  14. 0.432 AVIDEKEL USA (RSP11169)
  15. 0.432 Feral (RSP11206)
  16. 0.430 Feral (RSP10892)
  17. 0.430 Feral (RSP10890)
  18. 0.429 80E (RSP11212)
  19. 0.428 80E (RSP11213)
  20. 0.427 Cherry Blossom (RSP11317)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.423 Feral (RSP10890)
  2. 0.414 Monoica (RSP10241)
  3. 0.411 Carmagnola (RSP11037)
  4. 0.404 Fedora 17 (RSP10661)
  5. 0.395 Santhica27 (RSP11047)
  6. 0.395 Futura 75 (RSP10664)
  7. 0.394 Cbot-2019-005 (RSP11133)
  8. 0.390 Ivory (RSP10668)
  9. 0.389 Carmagnola (RSP10979)
  10. 0.387 JL yellow (RSP11075)
  11. 0.386 Tisza (RSP11044)
  12. 0.386 USO 31 (RSP10981)
  13. 0.380 KYRG-11 (RSP11051)
  14. 0.368 Kyrgyz Gold (RSP11054)
  15. 0.368 Cherry (RSP11143)
  16. 0.365 Kush Hemp E1 (RSP11128)
  17. 0.363 Cbot-2019-004 (RSP11132)
  18. 0.361 Lovrin (RSP10658)
  19. 0.360 Jiangji (RSP10653)
  20. 0.355 Cbot-2019-001 (RSP11129)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
8
Concordance:
6

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
d7f32f7c5d0eb98e4196f9a149fb41f3c457d1c23e1e3e8c915119cde0f168c3
Stamping Certificate
Download PDF (848.1 KB)
SHASUM Hash
b6415fbd8163e361dba392b853084bb4f7e0b5c07b4d2dcfbf1963c68b353ac9
QR code for RSP11261

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