Unknown-(Cherry Wine)-(003)
RSP 11270
Grower: Keaton Baker
General Information
- Sample Name
- Odyssey-003
- Accession Date
- September 26, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1951450 | A/C |
|
PKSG-2b | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1951451 | T/A |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.109 Cherry Blossom (RSP11298)
- 0.112 Unknown- Cherry Wine - 002 (RSP11269)
- 0.133 Cherry Blossom (RSP11309)
- 0.145 Cherry Blossom (RSP11312)
- 0.162 Cherry Blossom (RSP11320)
- 0.180 Unknown- Cherry Wine - 004 (RSP11271)
- 0.189 Cherry Blossom (RSP11311)
- 0.194 Cherry Blossom (RSP11332)
- 0.204 Unknown- Cherry Wine - 005 (RSP11272)
- 0.210 Unknown- Cherry Wine - 001 (RSP11268)
- 0.216 Cherry Blossom (RSP11316)
- 0.221 Cherry Blossom (RSP11310)
- 0.224 Cherry Blossom (RSP11328)
- 0.229 Cherry Blossom (RSP11300)
- 0.231 Cherry Blossom (RSP11321)
- 0.231 Cherry Blossom (RSP11304)
- 0.234 Cherry Blossom (RSP11308)
- 0.235 Cherry Blossom (RSP11335)
- 0.244 Cherry Wine (RSP11145)
- 0.247 Cherry Blossom (RSP11327)
Nearest genetic relatives (Base Tree)
- 0.315 Cherry (RSP11143)
- 0.326 Durban Poison (RSP11014)
- 0.329 Cbot-2019-004 (RSP11132)
- 0.336 Blueberry Cheesecake (RSP10684)
- 0.342 UP Sunrise (RSP10989)
- 0.343 Liberty Haze (RSP11000)
- 0.350 RKM-2018-003 (RSP11094)
- 0.354 Cherry (RSP11142)
- 0.358 Blueberry Cheesecake (RSP10672)
- 0.359 Cbot-2019-001 (RSP11129)
- 0.364 QUEEN JESUS (RSP10105)
- 0.377 Jiangji (RSP10653)
- 0.380 RKM-2018-020 (RSP11112)
- 0.385 CST (RSP11002)
- 0.386 Tygra (RSP10667)
- 0.388 Cbot-2019-005 (RSP11133)
- 0.391 RKM-2018-005 (RSP11096)
- 0.395 RKM-2018-029 (RSP11121)
- 0.396 RKM-2018-023 (RSP11115)
- 0.396 Blueberry Cheesecake (RSP10680)
Most genetically distant strains (All Samples)
- 0.483 Red Eye OG (RSP11190)
- 0.474 RKM-2018-026 (RSP11118)
- 0.467 RKM-2018-013 (RSP11104)
- 0.466 Abacus (RSP11266)
- 0.465 Rugburn OG (RSP11353)
- 0.463 Chem 91 (RSP11185)
- 0.453 Skywalker OG (RSP10837)
- 0.453 SFVxTK (RSP11072)
- 0.452 Jacks Cleaner (RSP11347)
- 0.452 Kush Hemp E1 (RSP11128)
- 0.452 RKM-2018-021 (RSP11113)
- 0.451 RKM-2018-032 (RSP11124)
- 0.449 RKM-2018-017 (RSP11109)
- 0.449 501st OG (RSP11241)
- 0.448 Hermaphrodite Research Sample1 (RSP11042)
- 0.447 RKM-2018-008 (RSP11099)
- 0.447 Glueberry OG (RSP11222)
- 0.447 JL yellow (RSP11075)
- 0.447 RKM-2018-012 (RSP11103)
- 0.445 Garlic (RSP11341)
Most genetically distant strains (Base Tree)
- 0.478 RKM-2018-026 (RSP11118)
- 0.466 Kush Hemp E1 (RSP11128)
- 0.461 Skywalker OG (RSP10837)
- 0.457 JL yellow (RSP11075)
- 0.454 RKM-2018-032 (RSP11124)
- 0.453 RKM-2018-034 (RSP11126)
- 0.445 RKM-2018-022 (RSP11114)
- 0.444 Hermaphrodite Research Sample1 (RSP11049)
- 0.439 RKM-2018-002 (RSP11093)
- 0.437 RKM-2018-019 (RSP11111)
- 0.437 Blue Dream (RSP11033)
- 0.435 Golden Goat 2 (RSP10991)
- 0.427 Ivory (RSP10668)
- 0.427 The Gift (RSP10988)
- 0.427 RKM-2018-009 (RSP11100)
- 0.425 RKM-2018-018 (RSP11110)
- 0.425 RKM-2018-006 (RSP11097)
- 0.424 Carmagnola (RSP11037)
- 0.424 Italian Kiss (RSP11034)
- 0.421 Futura 75 (RSP10664)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 70
- Concordance:
- 43
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 10
- Concordance:
- 10
Blockchain Registration Information
- Transaction ID
-
e95fdf29ea8f509b
4dacfb888428d30e 9c350a89b67881c1 23e02b298cadb20a - Stamping Certificate
- Download PDF (871.8 KB)
- SHASUM Hash
-
4eabb307b2b8b74b
fbf328699a4c4363 5fe6188d637d207b 14e72a42c1e80767