Unknown-(Cherry Wine)-(004)
RSP 11271
Grower: Keaton Baker
General Information
- Sample Name
- T-Rex-004
- Accession Date
- September 26, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
Nearest genetic relatives (All Samples)
- 0.150 Cherry Blossom (RSP11334)
- 0.176 Cherry Blossom CBG (RSP11303)
- 0.176 Cherry Blossom (RSP11335)
- 0.178 Cherry Blossom (RSP11308)
- 0.180 Unknown- Cherry Wine - 003 (RSP11270)
- 0.184 Cherry Blossom (RSP11315)
- 0.190 Unknown- Cherry Wine - 002 (RSP11269)
- 0.202 Cherry Blossom (RSP11321)
- 0.207 Cherry Blossom (RSP11325)
- 0.207 Unknown- Cherry Wine - 005 (RSP11272)
- 0.210 Cherry Blossom (RSP11320)
- 0.216 Cherry Blossom (RSP11310)
- 0.229 Cherry Blossom (RSP11324)
- 0.229 Cherry Blossom (RSP11299)
- 0.230 Cherry Blossom (RSP11332)
- 0.232 Unknown- Cherry Wine - 001 (RSP11268)
- 0.235 Cherry Blossom (RSP11317)
- 0.258 Cherry Blossom (RSP11311)
- 0.260 Sweet Grass (RSP11146)
- 0.265 Cherry Blossom (RSP11326)
Nearest genetic relatives (Base Tree)
- 0.294 Cbot-2019-004 (RSP11132)
- 0.300 Durban Poison (RSP11014)
- 0.314 Tygra (RSP10667)
- 0.318 Recon (RSP10755)
- 0.319 Liberty Haze (RSP11000)
- 0.326 UP Sunrise (RSP10989)
- 0.330 Cherry (RSP11143)
- 0.334 Blueberry Cheesecake (RSP10684)
- 0.343 Lovrin (RSP10658)
- 0.345 Santhica27 (RSP11047)
- 0.346 Tisza (RSP10659)
- 0.346 Monoica (RSP10241)
- 0.349 Hermaphrodite ResearchSample2 (RSP11050)
- 0.349 Feral (RSP10890)
- 0.350 USO 31 (RSP10981)
- 0.350 KYRG-11 (RSP11051)
- 0.352 QUEEN JESUS (RSP10105)
- 0.354 Jiangji (RSP10653)
- 0.354 CST (RSP11002)
- 0.354 Kyrgyz Gold (RSP11054)
Most genetically distant strains (All Samples)
- 0.468 Chem 91 (RSP11185)
- 0.444 501st OG (RSP11241)
- 0.443 Red Eye OG (RSP11190)
- 0.443 RKM-2018-002 (RSP11093)
- 0.439 New York City Deisel (RSP11225)
- 0.435 JL 4th Gen 5 (RSP11199)
- 0.434 Super Sour Diesel (RSP11191)
- 0.431 Abacus (RSP11266)
- 0.431 RKM-2018-001 (RSP11092)
- 0.431 Jacks Cleaner (RSP11347)
- 0.430 RKM-2018-024 (RSP11116)
- 0.429 RKM-2018-032 (RSP11124)
- 0.429 RKM-2018-021 (RSP11113)
- 0.427 Sour D (RSP11343)
- 0.427 RKM-2018-017 (RSP11109)
- 0.426 Garlic (RSP11341)
- 0.425 TI (RSP11149)
- 0.421 JL yellow (RSP11075)
- 0.420 RKM-2018-013 (RSP11104)
- 0.419 Hermaphrodite Research Sample1 (RSP11049)
Most genetically distant strains (Base Tree)
- 0.446 RKM-2018-002 (RSP11093)
- 0.427 RKM-2018-032 (RSP11124)
- 0.426 JL yellow (RSP11075)
- 0.423 Hermaphrodite Research Sample1 (RSP11049)
- 0.421 RKM-2018-018 (RSP11110)
- 0.421 Skywalker OG (RSP10837)
- 0.413 RKM-2018-026 (RSP11118)
- 0.410 Cbot-2019-006 (RSP11134)
- 0.408 RKM-2018-033 (RSP11125)
- 0.408 RKM-2018-028 (RSP11120)
- 0.406 Skunk 18 (RSP11038)
- 0.405 Kush Hemp E1 (RSP11128)
- 0.404 Black Beauty (RSP11035)
- 0.402 RKM-2018-022 (RSP11114)
- 0.402 RKM-2018-005 (RSP11096)
- 0.401 RKM-2018-009 (RSP11100)
- 0.399 Italian Kiss (RSP11034)
- 0.399 RKM-2018-029 (RSP11121)
- 0.398 RKM-2018-031 (RSP11123)
- 0.398 Blue Dream (RSP11033)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 70
- Concordance:
- 43
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 10
- Concordance:
- 10
Blockchain Registration Information
- Transaction ID
-
3a130b9f6ea84e9d
71e4dfde973d7688 f3d31f8306daf4c0 f5152b2a43719ea8 - Stamping Certificate
- Download PDF (853.9 KB)
- SHASUM Hash
-
ca9ce155ce0ff0a7
e7b2a6f80fbd9f55 0e39e1766e993953 76b20787fd196cb7