Queen Dream CBG

RSP 11276

Grower: Yabba Cannaba

General Information

Sample Name
LA9
Accession Date
October 9, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.01%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0414
male female RSP11276

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.089 Hot Blonde (RSP11292)
  2. 0.102 Queen Dream CBG (RSP11279)
  3. 0.106 Queen Dream CBG (RSP11285)
  4. 0.118 Queen Dream CBG (RSP11283)
  5. 0.138 Hot Blonde (RSP11290)
  6. 0.139 Queen Dream CBG (RSP11296)
  7. 0.146 Electra (RSP11366)
  8. 0.158 Queen Dream CBG (RSP11297)
  9. 0.165 Queen Dream CBG (RSP11293)
  10. 0.168 Queen Dream CBG (RSP11281)
  11. 0.170 Lift (RSP11378)
  12. 0.172 QQD2 (RSP11450)
  13. 0.179 Liberty Haze (RSP11000)
  14. 0.182 Domnesia (RSP11184)
  15. 0.182 QLF4 (RSP11441)
  16. 0.186 Serious Happiness (RSP10763)
  17. 0.191 QLE1 (RSP11451)
  18. 0.191 Wife (RSP11148)
  19. 0.192 FL30 7 11 2019 (RSP11361)
  20. 0.192 UP Sunrise (RSP10989)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.199 UP Sunrise (RSP10989)
  2. 0.201 Liberty Haze (RSP11000)
  3. 0.215 Cbot-2019-001 (RSP11129)
  4. 0.240 Blueberry Cheesecake (RSP10684)
  5. 0.270 RKM-2018-028 (RSP11120)
  6. 0.278 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.279 RKM-2018-009 (RSP11100)
  8. 0.281 Cherry (RSP11143)
  9. 0.282 Durban Poison (RSP11014)
  10. 0.288 RKM-2018-031 (RSP11123)
  11. 0.290 RKM-2018-020 (RSP11112)
  12. 0.291 Sour Raspberry (RSP10551)
  13. 0.295 RKM-2018-003 (RSP11094)
  14. 0.295 RKM-2018-029 (RSP11121)
  15. 0.300 Italian Kiss (RSP11034)
  16. 0.301 Blue Dream (RSP11033)
  17. 0.302 Recon (RSP10755)
  18. 0.303 Blueberry Cheesecake (RSP10672)
  19. 0.304 RKM-2018-033 (RSP11125)
  20. 0.304 RKM-2018-018 (RSP11110)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.439 80E (RSP11211)
  2. 0.429 80E (RSP11213)
  3. 0.426 JL yellow (RSP11075)
  4. 0.426 R3in134 (SRR14708220)
  5. 0.424 R1in136 (SRR14708226)
  6. 0.424 Tiger Tail -30- (RSP11484)
  7. 0.422 IUP2 (SRR14708257)
  8. 0.418 JL 4th Gen 2 (RSP11194)
  9. 0.414 Beniko (SRR14708275)
  10. 0.414 XBL1 (SRR14708207)
  11. 0.414 R3in134 (SRR14708218)
  12. 0.413 R1in136 (SRR14708237)
  13. 0.413 IUP3 (SRR14708256)
  14. 0.412 IUP1 (SRR14708258)
  15. 0.411 Squirrel Tail -81- (RSP11622)
  16. 0.411 CS Indica (RSP11658)
  17. 0.411 Feral (RSP10890)
  18. 0.410 80E (RSP11212)
  19. 0.410 BagSeed (RSP12501)
  20. 0.410 JL 4th Gen 5 (RSP11199)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.429 JL yellow (RSP11075)
  2. 0.416 Carmagnola (RSP11037)
  3. 0.414 Feral (RSP10890)
  4. 0.404 Monoica (RSP10241)
  5. 0.396 Cbot-2019-005 (RSP11133)
  6. 0.394 Kush Hemp E1 (RSP11128)
  7. 0.393 Carmagnola (RSP10979)
  8. 0.391 Santhica27 (RSP11047)
  9. 0.388 RKM-2018-034 (RSP11126)
  10. 0.383 Kyrgyz Gold (RSP11054)
  11. 0.382 RKM-2018-002 (RSP11093)
  12. 0.380 RKM-2018-026 (RSP11118)
  13. 0.379 Futura 75 (RSP10664)
  14. 0.379 KYRG-11 (RSP11051)
  15. 0.371 Fedora 17 (RSP10661)
  16. 0.370 Tisza (RSP11044)
  17. 0.369 Jiangji (RSP10653)
  18. 0.369 Skywalker OG (RSP10837)
  19. 0.361 USO 31 (RSP10981)
  20. 0.359 Ivory (RSP10668)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448468
Overlapping SNPs:
70
Concordance:
47

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495226
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
7179637098deeee5a65bae2346b5d8b8541e1c70ad1b9a9399bbfff25f78f5e8
Stamping Certificate
Download PDF (858.2 KB)
SHASUM Hash
dcc5c3542ef818eb868ad9153ef8fb7c346205a0dce1cfcb12f81fc3cd04eb49
QR code for RSP11276

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