Hot Blonde

RSP 11290

Grower: Yabba Cannaba

General Information

Sample Name
QI3
Accession Date
October 9, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.97%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0400
male female RSP11290

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.116 Queen Dream CBG (RSP11279)
  2. 0.120 Queen Dream CBG (RSP11285)
  3. 0.128 Hot Blonde (RSP11292)
  4. 0.138 Queen Dream CBG (RSP11276)
  5. 0.142 QQD2 (RSP11450)
  6. 0.155 QLF4 (RSP11441)
  7. 0.156 Queen Dream CBG (RSP11287)
  8. 0.160 Electra (RSP11366)
  9. 0.164 Queen Dream CBG (RSP11281)
  10. 0.165 Queen Dream CBG (RSP11297)
  11. 0.180 Lift (RSP11378)
  12. 0.181 Queen Dream CBG (RSP11293)
  13. 0.182 Serious Happiness (RSP10763)
  14. 0.182 Queen Dream CBG (RSP11296)
  15. 0.185 Blue Dream (RSP11017)
  16. 0.185 Blue Dream (RSP11004)
  17. 0.187 Blue Dream (RSP11009)
  18. 0.190 Blue Dream (RSP11010)
  19. 0.191 QLE1 (RSP11451)
  20. 0.193 Doug s Varin (RSP11243)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.173 UP Sunrise (RSP10989)
  2. 0.215 Blueberry Cheesecake (RSP10684)
  3. 0.238 Durban Poison (RSP11014)
  4. 0.245 Cbot-2019-001 (RSP11129)
  5. 0.252 Liberty Haze (RSP11000)
  6. 0.271 Blue Dream (RSP11033)
  7. 0.273 Golden Goat 2 (RSP10991)
  8. 0.274 Hermaphrodite Research Sample1 (RSP11049)
  9. 0.282 Sour Raspberry (RSP10551)
  10. 0.293 RKM-2018-018 (RSP11110)
  11. 0.294 Queen Jesus (RSP10105)
  12. 0.301 RKM-2018-031 (RSP11123)
  13. 0.303 Italian Kiss (RSP11034)
  14. 0.303 Recon (RSP10755)
  15. 0.304 RKM-2018-028 (RSP11120)
  16. 0.306 Blueberry Cheesecake (RSP10672)
  17. 0.307 RKM-2018-009 (RSP11100)
  18. 0.308 RKM-2018-029 (RSP11121)
  19. 0.315 Cherry (RSP11143)
  20. 0.316 Hermaphrodite ResearchSample2 (RSP11050)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.434 80E (RSP11211)
  2. 0.433 80E (RSP11213)
  3. 0.426 Tiger Tail -30- (RSP11484)
  4. 0.426 Cherry Blossom (RSP11311)
  5. 0.425 IUP2 (SRR14708257)
  6. 0.425 Northern Lights (RSP11501)
  7. 0.421 JL 3rd Gen Father (RSP11196)
  8. 0.421 White Label 1 (RSP11336)
  9. 0.421 IUP1 (SRR14708258)
  10. 0.419 IUP3 (SRR14708256)
  11. 0.418 JL 4th Gen 2 (RSP11194)
  12. 0.417 Squirrel Tail -81- (RSP11622)
  13. 0.417 R3in134 (SRR14708220)
  14. 0.415 JL yellow (RSP11075)
  15. 0.415 Tanao Sri-white -80- (RSP11621)
  16. 0.414 R3in134 (SRR14708218)
  17. 0.414 R1in136 (SRR14708226)
  18. 0.412 Feral (RSP10890)
  19. 0.410 JL 4th Gen 5 (RSP11199)
  20. 0.409 Cherry Blossom (RSP11301)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.414 Cbot-2019-005 (RSP11133)
  2. 0.411 JL yellow (RSP11075)
  3. 0.408 Kush Hemp E1 (RSP11128)
  4. 0.401 Feral (RSP10890)
  5. 0.399 RKM-2018-026 (RSP11118)
  6. 0.393 Carmagnola (RSP11037)
  7. 0.391 Monoica (RSP10241)
  8. 0.382 Skunk#18 (RSP11038)
  9. 0.381 Santhica27 (RSP11047)
  10. 0.380 Skywalker OG (RSP10837)
  11. 0.379 USO 31 (RSP10981)
  12. 0.375 Fedora 17 (RSP10661)
  13. 0.372 Futura 75 (RSP10664)
  14. 0.371 Ivory (RSP10668)
  15. 0.371 Kyrgyz Gold (RSP11054)
  16. 0.367 KYRG-11 (RSP11051)
  17. 0.365 RKM-2018-034 (RSP11126)
  18. 0.364 Black Beauty (RSP11035)
  19. 0.363 Jiangji (RSP10653)
  20. 0.362 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347172
Overlapping SNPs:
69
Concordance:
42

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
a0f9f309c3e14de1b957e446b9c5af61884c0f56dfd8ebe77e6aba04e304150c
Stamping Certificate
Download PDF (852.4 KB)
SHASUM Hash
ed185d22e581d5d98a8e3326a57d2a92ba04ed80d86fb25df4da06bbc39b3c61
QR code for RSP11290

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