Queen Dream CBG

RSP 11293

Grower: Yabba Cannaba

General Information

Sample Name
LG1
Accession Date
October 9, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.95%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0459
male female RSP11293

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.139 Queen Dream CBG (RSP11279)
  2. 0.140 Queen Dream CBG (RSP11297)
  3. 0.148 Hot Blonde (RSP11292)
  4. 0.160 Queen Dream CBG (RSP11285)
  5. 0.160 Queen Dream (RSP11278)
  6. 0.165 Queen Dream CBG (RSP11276)
  7. 0.181 Hot Blonde (RSP11290)
  8. 0.189 QQD2 (RSP11450)
  9. 0.190 UP Sunrise (RSP10989)
  10. 0.191 Queen Dream (RSP11291)
  11. 0.191 QLE1 (RSP11451)
  12. 0.191 Queen Dream CBG (RSP11283)
  13. 0.198 Serious Happiness (RSP10763)
  14. 0.199 Queen Dream CBG (RSP11296)
  15. 0.203 Domnesia (RSP11184)
  16. 0.203 Queen Dream (RSP11289)
  17. 0.207 Joy (RSP11380)
  18. 0.207 Blue Dream (RSP11010)
  19. 0.209 Electra (RSP11366)
  20. 0.211 QLF4 (RSP11441)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.186 UP Sunrise (RSP10989)
  2. 0.216 Cbot-2019-001 (RSP11129)
  3. 0.237 Liberty Haze (RSP11000)
  4. 0.265 Blueberry Cheesecake (RSP10684)
  5. 0.265 RKM-2018-028 (RSP11120)
  6. 0.268 RKM-2018-020 (RSP11112)
  7. 0.278 Golden Goat 2 (RSP10991)
  8. 0.280 Blue Dream (RSP11033)
  9. 0.281 RKM-2018-018 (RSP11110)
  10. 0.284 Hermaphrodite Research Sample1 (RSP11049)
  11. 0.297 RKM-2018-033 (RSP11125)
  12. 0.299 Cherry (RSP11143)
  13. 0.300 Cbot-2019-006 (RSP11134)
  14. 0.303 RKM-2018-009 (RSP11100)
  15. 0.303 Durban Poison (RSP11014)
  16. 0.303 RKM-2018-003 (RSP11094)
  17. 0.309 Kimbo Slice (RSP10997)
  18. 0.310 Italian Kiss (RSP11034)
  19. 0.313 RKM-2018-031 (RSP11123)
  20. 0.316 RKM-2018-023 (RSP11115)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.444 80E (RSP11213)
  2. 0.443 80E (RSP11211)
  3. 0.433 R3in134 (SRR14708220)
  4. 0.431 R1in136 (SRR14708237)
  5. 0.430 CS (RSP11208)
  6. 0.429 Tiger Tail -30- (RSP11484)
  7. 0.428 Cherry Blossom (RSP11329)
  8. 0.426 Feral (RSP10890)
  9. 0.425 Feral (RSP11205)
  10. 0.424 R1in136 (SRR14708226)
  11. 0.424 R3in134 (SRR14708218)
  12. 0.424 Carmagnola (RSP11037)
  13. 0.421 Cherry Blossom (RSP11326)
  14. 0.421 Squirrel Tail -81- (RSP11622)
  15. 0.420 R1in136 (SRR14708225)
  16. 0.420 R1in136 (SRR14708227)
  17. 0.419 Fedora 17 (SRR14708222)
  18. 0.419 Feral (RSP11206)
  19. 0.418 Carmagnola (RSP10980)
  20. 0.418 IUP1 (SRR14708258)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.426 Feral (RSP10890)
  2. 0.420 Kush Hemp E1 (RSP11128)
  3. 0.416 Carmagnola (RSP11037)
  4. 0.411 JL yellow (RSP11075)
  5. 0.409 Kyrgyz Gold (RSP11054)
  6. 0.407 Santhica27 (RSP11047)
  7. 0.406 Ivory (RSP10668)
  8. 0.405 Monoica (RSP10241)
  9. 0.404 Cherry (RSP11142)
  10. 0.400 Futura 75 (RSP10664)
  11. 0.398 Carmagnola (RSP10979)
  12. 0.396 Fedora 17 (RSP10661)
  13. 0.393 RKM-2018-019 (RSP11111)
  14. 0.392 KYRG-11 (RSP11051)
  15. 0.392 Black Beauty (RSP11035)
  16. 0.390 RKM-2018-034 (RSP11126)
  17. 0.386 USO 31 (RSP10981)
  18. 0.383 Jiangji (RSP10653)
  19. 0.382 RKM-2018-026 (RSP11118)
  20. 0.381 RKM-2018-022 (RSP11114)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346944
Overlapping SNPs:
69
Concordance:
46

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
7d24a98ac2c70f1ae4dd707610e51e431bc8e715e9583502e51b54199afe8f4c
Stamping Certificate
Download PDF (842.9 KB)
SHASUM Hash
2826cd87c36482f649c17eb3c577a131ea21a2c075bdb04d23ec355b750a99f6
QR code for RSP11293

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