Cherry Blossom

RSP 11298

Grower: Yabba Cannaba

General Information

Sample Name
CJ9
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.03%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0457
male female RSP11298

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.109 Unknown- Cherry Wine - 003 (RSP11270)
  2. 0.149 Cherry Blossom (RSP11312)
  3. 0.154 Cherry Blossom (RSP11309)
  4. 0.185 Cherry Blossom (RSP11320)
  5. 0.187 Unknown- Cherry Wine - 002 (RSP11269)
  6. 0.188 Cherry Blossom (RSP11304)
  7. 0.207 Cherry Wine (RSP11145)
  8. 0.228 Cherry Blossom (RSP11316)
  9. 0.234 Cherry Blossom CBG (RSP11303)
  10. 0.243 Cherry Blossom (RSP11299)
  11. 0.246 Cherry Blossom (RSP11330)
  12. 0.252 Cherry Blossom (RSP11319)
  13. 0.256 Unknown- Cherry Wine - 005 (RSP11272)
  14. 0.257 RAPHAEL 2 (RSP11172)
  15. 0.258 Cherry Wine (RSP11305)
  16. 0.259 Cherry Blossom (RSP11332)
  17. 0.260 Cherry Wine (RSP11307)
  18. 0.262 Cherry Blossom (RSP11310)
  19. 0.268 Unknown- Cherry Wine - 004 (RSP11271)
  20. 0.269 Otto (RSP11147)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.287 Blueberry Cheesecake (RSP10684)
  2. 0.297 Cherry (RSP11143)
  3. 0.326 Durban Poison (RSP11014)
  4. 0.332 Liberty Haze (RSP11000)
  5. 0.349 UP Sunrise (RSP10989)
  6. 0.360 Cbot-2019-004 (RSP11132)
  7. 0.366 Cherry (RSP11142)
  8. 0.367 Cbot-2019-001 (RSP11129)
  9. 0.375 Blueberry Cheesecake (RSP10672)
  10. 0.382 RKM-2018-005 (RSP11096)
  11. 0.385 RKM-2018-031 (RSP11123)
  12. 0.387 CST (RSP11002)
  13. 0.387 RKM-2018-003 (RSP11094)
  14. 0.390 Tygra (RSP10667)
  15. 0.391 Kimbo Slice (RSP10997)
  16. 0.393 RKM-2018-029 (RSP11121)
  17. 0.395 Recon (RSP10755)
  18. 0.396 QUEEN JESUS (RSP10105)
  19. 0.397 Hermaphrodite ResearchSample2 (RSP11050)
  20. 0.400 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.483 Cherry Blossom (RSP11318)
  2. 0.483 RKM-2018-006 (RSP11097)
  3. 0.476 RKM-2018-026 (RSP11118)
  4. 0.465 CS (RSP11208)
  5. 0.460 Brunswick High (RSP11164)
  6. 0.459 JL yellow (RSP11075)
  7. 0.458 Green Crack (RSP11339)
  8. 0.455 JL 3rd Gen Father (RSP11196)
  9. 0.452 Red Eye OG (RSP11190)
  10. 0.452 Chem 91 (RSP11185)
  11. 0.452 Abacus (RSP11266)
  12. 0.450 Escape Velocity (RSP11165)
  13. 0.449 Feral (RSP10892)
  14. 0.449 Eran Almog (RSP10937)
  15. 0.447 Hermaphrodite Research Sample1 (RSP11042)
  16. 0.447 Jacks Cleaner (RSP11347)
  17. 0.446 Queen Dream CBG (RSP11287)
  18. 0.445 White Label 1 (RSP11336)
  19. 0.445 RKM-2018-012 (RSP11103)
  20. 0.445 Flo (RSP11232)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.488 RKM-2018-006 (RSP11097)
  2. 0.477 RKM-2018-026 (RSP11118)
  3. 0.463 JL yellow (RSP11075)
  4. 0.449 Kush Hemp E1 (RSP11128)
  5. 0.447 RKM-2018-019 (RSP11111)
  6. 0.447 RKM-2018-028 (RSP11120)
  7. 0.443 USO 31 (RSP10981)
  8. 0.443 RKM-2018-022 (RSP11114)
  9. 0.442 Blue Dream (RSP11033)
  10. 0.442 Santhica27 (RSP11047)
  11. 0.441 Black Beauty (RSP11035)
  12. 0.441 Carmagnola (RSP11037)
  13. 0.439 Lovrin (RSP10658)
  14. 0.438 Hermaphrodite Research Sample1 (RSP11049)
  15. 0.434 Sour Raspberry (RSP10551)
  16. 0.434 Futura 75 (RSP10664)
  17. 0.434 Fedora 17 (RSP10661)
  18. 0.432 Monoica (RSP10241)
  19. 0.432 Carmagnola (RSP10979)
  20. 0.431 RKM-2018-034 (RSP11126)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
66
Concordance:
41

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495179
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
42a646a7536d179ef55add5437cec3be23177ae3bb1b6f3bd0c01ad3608a7927
Stamping Certificate
Download PDF (851.9 KB)
SHASUM Hash
f32c0231b77b3d170c37e73f8eea7d721420e982383d6a635694646f62506590
QR code for RSP11298

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