Cherry Blossom
RSP 11298
Grower: Yabba Cannaba
General Information
- Sample Name
- CJ9
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.112 Unknown--Cherry Wine---003- (RSP11270)
- 0.127 Cherry Blossom (RSP11309)
- 0.158 Cherry Blossom (RSP11312)
- 0.191 Cherry Blossom (RSP11320)
- 0.193 Cherry Blossom (RSP11304)
- 0.194 Unknown--Cherry Wine---002- (RSP11269)
- 0.204 Cherry Wine (RSP11145)
- 0.220 Cherry Blossom (RSP11330)
- 0.228 Cherry Blossom CBG (RSP11303)
- 0.234 Cherry Blossom (RSP11316)
- 0.253 Joy (RSP11380)
- 0.255 Cherry Blossom (RSP11310)
- 0.255 Cherry Blossom (RSP11299)
- 0.257 Cherry Blossom (RSP11332)
- 0.262 Unknown--Cherry Wine---005- (RSP11272)
- 0.262 Otto (RSP11147)
- 0.265 Cherry Blossom (RSP11319)
- 0.269 RAPHAEL #2 (RSP11172)
- 0.272 Electra (RSP11366)
- 0.273 Blueberry Cheesecake (RSP10684)
Nearest genetic relatives (Base Tree)
- 0.297 Blueberry Cheesecake (RSP10684)
- 0.298 Cherry (RSP11143)
- 0.339 UP Sunrise (RSP10989)
- 0.350 Liberty Haze (RSP11000)
- 0.354 Durban Poison (RSP11014)
- 0.369 Cherry (RSP11142)
- 0.374 Cbot-2019-001 (RSP11129)
- 0.379 Cbot-2019-004 (RSP11132)
- 0.383 RKM-2018-029 (RSP11121)
- 0.383 RKM-2018-031 (RSP11123)
- 0.386 Blueberry Cheesecake (RSP10672)
- 0.390 Recon (RSP10755)
- 0.393 Cbot-2019-006 (RSP11134)
- 0.395 Hermaphrodite ResearchSample2 (RSP11050)
- 0.396 RKM-2018-003 (RSP11094)
- 0.396 CST (RSP11002)
- 0.397 Gold Cracker (RSP11048)
- 0.398 Kimbo Slice (RSP10997)
- 0.400 RKM-2018-033 (RSP11125)
- 0.401 RKM-2018-004 (RSP11096)
Most genetically distant strains (All Samples)
- 0.483 RKM-2018-006 (RSP11097)
- 0.483 Green Crack (RSP11339)
- 0.472 Cherry Blossom (RSP11318)
- 0.470 JL 3rd Gen Father (RSP11196)
- 0.469 RKM-2018-026 (RSP11118)
- 0.468 Queen Dream CBG (RSP11287)
- 0.466 B52 (SRR14708255)
- 0.465 GG4 (RSP11978)
- 0.465 Hindu Kush (SRR14708261)
- 0.464 Ruderalis Indica (SRR14708267)
- 0.464 Northern Skunk (RSP11456)
- 0.463 JL yellow (RSP11075)
- 0.462 Queen Dream CBG (RSP11275)
- 0.461 Alpine Rocket (SRR14708266)
- 0.459 CS (RSP11208)
- 0.458 Big Bud (SRR14708270)
- 0.458 White Label 1 (RSP11336)
- 0.455 Kush Hemp E1 (RSP11128)
- 0.455 Danny Noonan (RSP11070)
- 0.454 R1in136 (SRR14708227)
Most genetically distant strains (Base Tree)
- 0.498 RKM-2018-006 (RSP11097)
- 0.478 RKM-2018-026 (RSP11118)
- 0.478 JL yellow (RSP11075)
- 0.464 Kush Hemp E1 (RSP11128)
- 0.457 RKM-2018-019 (RSP11111)
- 0.452 RKM-2018-022 (RSP11114)
- 0.451 Lovrin (RSP10658)
- 0.450 Black Beauty (RSP11035)
- 0.450 RKM-2018-028 (RSP11120)
- 0.446 Hermaphrodite Research Sample1 (RSP11049)
- 0.443 Blue Dream (RSP11033)
- 0.442 Fedora 17 (RSP10661)
- 0.440 Carmagnola (RSP11037)
- 0.437 Santhica27 (RSP11047)
- 0.436 USO 31 (RSP10981)
- 0.436 RKM-2018-009 (RSP11100)
- 0.436 Futura 75 (RSP10664)
- 0.435 RKM-2018-018 (RSP11110)
- 0.433 The Gift (RSP10988)
- 0.433 RKM-2018-032 (RSP11124)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 41
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
42a646a7536d179e
f55add5437cec3be 23177ae3bb1b6f3b d0c01ad3608a7927 - Stamping Certificate
- Download PDF (851.9 KB)
- SHASUM Hash
-
f32c0231b77b3d17
0c37e73f8eea7d72 1420e982383d6a63 5694646f62506590