Cherry Blossom

RSP 11300

Grower: Yabba Cannaba

General Information

Sample Name
CB8
Accession Date
October 16, 2019
Reported Plant Sex
Female
DNA Extracted From
Stem

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.04%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0458
male female RSP11300

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.110C>T p.Ala37Val missense variant moderate contig83 1803259

IGV: Start, Jump

G/A
NGS:
0.013
C90:
0.000
FAD2-2

UniProt

c.47_57delTGAATCATACT p.Leu16fs frameshift variant high contig83 1803311

IGV: Start, Jump

GAGTATGATTCA/G
NGS:
0.018
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.148 Cherry Blossom (RSP11319)
  2. 0.149 Cherry Blossom (RSP11320)
  3. 0.160 Cherry Blossom (RSP11332)
  4. 0.181 Cherry Blossom (RSP11312)
  5. 0.203 13 Cherries (RSP11442)
  6. 0.208 Cherry Blossom (RSP11313)
  7. 0.211 Unknown--Cherry Wine---005- (RSP11272)
  8. 0.242 Suver Haze (RSP11364)
  9. 0.242 Unknown--Cherry Wine---002- (RSP11269)
  10. 0.242 Domnesia (RSP11184)
  11. 0.245 Cherry Blossom (RSP11309)
  12. 0.248 Cherry Blossom (RSP11310)
  13. 0.252 Blueberry Cheesecake (RSP10684)
  14. 0.253 Cherry Blossom (RSP11304)
  15. 0.253 Unknown--Cherry Wine---003- (RSP11270)
  16. 0.257 Cherry Blossom (RSP11324)
  17. 0.257 Lift (RSP11378)
  18. 0.259 Cherry Blossom (RSP11301)
  19. 0.259 Electra (RSP11366)
  20. 0.259 2nd Gen Cherry (RSP11141)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.493 Cherry Blossom (RSP11323)
  2. 0.491 Pure Power Plant (RSP11265)
  3. 0.487 R1in136 (SRR14708226)
  4. 0.478 BagSeed (RSP12501)
  5. 0.477 Bialobrzeskie (SRR14708244)
  6. 0.472 JL yellow (RSP11075)
  7. 0.470 Santhica 27 (SRR14708211)
  8. 0.469 Delta-llosa (SRR14708272)
  9. 0.469 R1in136 (SRR14708237)
  10. 0.467 Rugburn OG (RSP11353)
  11. 0.465 GMO x Zkittlez #43 (RSP11976)
  12. 0.465 Fatso (RSP11741)
  13. 0.464 Garlic (RSP11341)
  14. 0.462 Red Eye OG (RSP11190)
  15. 0.461 Torrey (RSP11449)
  16. 0.461 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  17. 0.461 JL 3rd Gen Mother (RSP11214)
  18. 0.460 Ferimon 12 (SRR14708233)
  19. 0.460 R3in134 (SRR14708218)
  20. 0.459 501st OG (RSP11241)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448252
Overlapping SNPs:
66
Concordance:
44

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495212
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
1d6156b42bfc661d682ca3692bf814e04621f037fd1c431a295281bb67d0d82b
Stamping Certificate
Download PDF (845.6 KB)
SHASUM Hash
71ffe3791ef647147372ef29d796df6e3e318f7e55f07e79f3e15cb106d9c94b
QR code for RSP11300

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