Cherry Blossom

RSP 11301

Grower: Yabba Cannaba

General Information

Sample Name
CE10
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.92%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0503
male female RSP11301

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.8G>A p.Cys3Tyr missense variant moderate contig1772 2082234

IGV: Start, Jump

G/A
NGS:
0.057
C90:
0.000
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.190 Unknown- Cherry Wine - 005 (RSP11272)
  2. 0.213 Unknown- Cherry Wine - 001 (RSP11268)
  3. 0.213 Cherry Blossom (RSP11322)
  4. 0.220 Cherry Blossom (RSP11332)
  5. 0.226 Cherry Blossom (RSP11321)
  6. 0.227 Cherry Blossom (RSP11327)
  7. 0.240 Cherry Blossom (RSP11309)
  8. 0.243 UP Sunrise (RSP10989)
  9. 0.248 Cherry Blossom (RSP11313)
  10. 0.248 Cherry Blossom (RSP11320)
  11. 0.258 Cherry Blossom (RSP11328)
  12. 0.258 Cherry Blossom (RSP11331)
  13. 0.258 Unknown- Cherry Wine - 002 (RSP11269)
  14. 0.260 Cherry Blossom (RSP11325)
  15. 0.262 Cherry Blossom (RSP11300)
  16. 0.264 AVIDEKEL 2 0 (RSP11174)
  17. 0.267 Cherry Blossom (RSP11323)
  18. 0.267 Cherry Blossom (RSP11334)
  19. 0.268 Blue Dream (RSP11010)
  20. 0.269 Cherry Blossom (RSP11315)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.253 UP Sunrise (RSP10989)
  2. 0.306 Cbot-2019-001 (RSP11129)
  3. 0.309 Cherry (RSP11143)
  4. 0.345 Durban Poison (RSP11014)
  5. 0.360 Blue Dream (RSP11033)
  6. 0.361 Liberty Haze (RSP11000)
  7. 0.367 Cbot-2019-005 (RSP11133)
  8. 0.373 Cherry (RSP11142)
  9. 0.374 RKM-2018-009 (RSP11100)
  10. 0.376 Blueberry Cheesecake (RSP10684)
  11. 0.376 RKM-2018-028 (RSP11120)
  12. 0.379 Kimbo Slice (RSP10997)
  13. 0.382 Cbot-2019-004 (RSP11132)
  14. 0.382 Ivory (RSP10668)
  15. 0.383 Gold Cracker (RSP11048)
  16. 0.384 RKM-2018-006 (RSP11097)
  17. 0.385 Sour Raspberry (RSP10551)
  18. 0.397 Recon (RSP10755)
  19. 0.398 CST (RSP11002)
  20. 0.399 QUEEN JESUS (RSP10105)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.505 RKM-2018-022 (RSP11114)
  2. 0.490 Red Eye OG (RSP11190)
  3. 0.486 Rugburn OG (RSP11353)
  4. 0.485 Sour D (RSP11343)
  5. 0.480 RKM-2018-013 (RSP11104)
  6. 0.477 Pie Hoe (RSP11073)
  7. 0.476 Star Dawg (RSP11352)
  8. 0.476 New York City Deisel (RSP11225)
  9. 0.475 Garlic (RSP11341)
  10. 0.473 RKM-2018-034 (RSP11126)
  11. 0.473 RKM-2018-002 (RSP11093)
  12. 0.472 RKM-2018-026 (RSP11118)
  13. 0.470 Pure Power Plant (RSP11265)
  14. 0.467 RKM-2018-012 (RSP11103)
  15. 0.467 CS (RSP11208)
  16. 0.467 Feral (RSP11205)
  17. 0.463 East Coast Sour Diesel (RSP10243)
  18. 0.462 RKM-2018-019 (RSP11111)
  19. 0.459 Skywalker OG (RSP10837)
  20. 0.458 501st OG (RSP11241)

Most genetically distant strains (Base Tree)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.516 RKM-2018-022 (RSP11114)
  2. 0.490 RKM-2018-002 (RSP11093)
  3. 0.477 Pie Hoe (RSP11073)
  4. 0.474 RKM-2018-034 (RSP11126)
  5. 0.469 RKM-2018-026 (RSP11118)
  6. 0.466 RKM-2018-019 (RSP11111)
  7. 0.462 Kush Hemp E1 (RSP11128)
  8. 0.461 Skywalker OG (RSP10837)
  9. 0.456 Monoica (RSP10241)
  10. 0.453 Feral (RSP10890)
  11. 0.444 Kyrgyz Gold (RSP11054)
  12. 0.441 Black Beauty (RSP11035)
  13. 0.438 Carmagnola (RSP11037)
  14. 0.438 Fedora 17 (RSP10661)
  15. 0.435 RKM-2018-032 (RSP11124)
  16. 0.432 RKM-2018-005 (RSP11096)
  17. 0.431 JL yellow (RSP11075)
  18. 0.430 USO 31 (RSP10981)
  19. 0.429 Santhica27 (RSP11047)
  20. 0.428 RKM-2018-023 (RSP11115)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346573
Overlapping SNPs:
65
Concordance:
45

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495242
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
ae4b7e4f5365754e94f131a7da41881d91b0c0ffd5e501789471f10660d17e02
Stamping Certificate
Download PDF (828.3 KB)
SHASUM Hash
5042b9d8da5406f37a92651ce0a77fc644fb69fa6c71c9aacaf45074422e9c7a
QR code for RSP11301

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