Cherry Blossom
RSP 11301
Grower: Yabba Cannaba
General Information
- Sample Name
- CE10
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.190 Unknown- Cherry Wine - 005 (RSP11272)
- 0.213 Unknown- Cherry Wine - 001 (RSP11268)
- 0.213 Cherry Blossom (RSP11322)
- 0.220 Cherry Blossom (RSP11332)
- 0.226 Cherry Blossom (RSP11321)
- 0.227 Cherry Blossom (RSP11327)
- 0.240 Cherry Blossom (RSP11309)
- 0.243 UP Sunrise (RSP10989)
- 0.248 Cherry Blossom (RSP11313)
- 0.248 Cherry Blossom (RSP11320)
- 0.258 Cherry Blossom (RSP11328)
- 0.258 Cherry Blossom (RSP11331)
- 0.258 Unknown- Cherry Wine - 002 (RSP11269)
- 0.260 Cherry Blossom (RSP11325)
- 0.262 Cherry Blossom (RSP11300)
- 0.264 AVIDEKEL 2 0 (RSP11174)
- 0.267 Cherry Blossom (RSP11323)
- 0.267 Cherry Blossom (RSP11334)
- 0.268 Blue Dream (RSP11010)
- 0.269 Cherry Blossom (RSP11315)
Nearest genetic relatives (Base Tree)
- 0.253 UP Sunrise (RSP10989)
- 0.306 Cbot-2019-001 (RSP11129)
- 0.309 Cherry (RSP11143)
- 0.345 Durban Poison (RSP11014)
- 0.360 Blue Dream (RSP11033)
- 0.361 Liberty Haze (RSP11000)
- 0.367 Cbot-2019-005 (RSP11133)
- 0.373 Cherry (RSP11142)
- 0.374 RKM-2018-009 (RSP11100)
- 0.376 Blueberry Cheesecake (RSP10684)
- 0.376 RKM-2018-028 (RSP11120)
- 0.379 Kimbo Slice (RSP10997)
- 0.382 Cbot-2019-004 (RSP11132)
- 0.382 Ivory (RSP10668)
- 0.383 Gold Cracker (RSP11048)
- 0.384 RKM-2018-006 (RSP11097)
- 0.385 Sour Raspberry (RSP10551)
- 0.397 Recon (RSP10755)
- 0.398 CST (RSP11002)
- 0.399 QUEEN JESUS (RSP10105)
Most genetically distant strains (All Samples)
- 0.505 RKM-2018-022 (RSP11114)
- 0.490 Red Eye OG (RSP11190)
- 0.486 Rugburn OG (RSP11353)
- 0.485 Sour D (RSP11343)
- 0.480 RKM-2018-013 (RSP11104)
- 0.477 Pie Hoe (RSP11073)
- 0.476 Star Dawg (RSP11352)
- 0.476 New York City Deisel (RSP11225)
- 0.475 Garlic (RSP11341)
- 0.473 RKM-2018-034 (RSP11126)
- 0.473 RKM-2018-002 (RSP11093)
- 0.472 RKM-2018-026 (RSP11118)
- 0.470 Pure Power Plant (RSP11265)
- 0.467 RKM-2018-012 (RSP11103)
- 0.467 CS (RSP11208)
- 0.467 Feral (RSP11205)
- 0.463 East Coast Sour Diesel (RSP10243)
- 0.462 RKM-2018-019 (RSP11111)
- 0.459 Skywalker OG (RSP10837)
- 0.458 501st OG (RSP11241)
Most genetically distant strains (Base Tree)
- 0.516 RKM-2018-022 (RSP11114)
- 0.490 RKM-2018-002 (RSP11093)
- 0.477 Pie Hoe (RSP11073)
- 0.474 RKM-2018-034 (RSP11126)
- 0.469 RKM-2018-026 (RSP11118)
- 0.466 RKM-2018-019 (RSP11111)
- 0.462 Kush Hemp E1 (RSP11128)
- 0.461 Skywalker OG (RSP10837)
- 0.456 Monoica (RSP10241)
- 0.453 Feral (RSP10890)
- 0.444 Kyrgyz Gold (RSP11054)
- 0.441 Black Beauty (RSP11035)
- 0.438 Carmagnola (RSP11037)
- 0.438 Fedora 17 (RSP10661)
- 0.435 RKM-2018-032 (RSP11124)
- 0.432 RKM-2018-005 (RSP11096)
- 0.431 JL yellow (RSP11075)
- 0.430 USO 31 (RSP10981)
- 0.429 Santhica27 (RSP11047)
- 0.428 RKM-2018-023 (RSP11115)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 65
- Concordance:
- 45
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
ae4b7e4f5365754e
94f131a7da41881d 91b0c0ffd5e50178 9471f10660d17e02 - Stamping Certificate
- Download PDF (828.3 KB)
- SHASUM Hash
-
5042b9d8da5406f3
7a92651ce0a77fc6 44fb69fa6c71c9aa caf45074422e9c7a