Cherry Blossom

RSP 11301

Grower: Yabba Cannaba

General Information

Sample Name
CE10
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.92%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0503
male female RSP11301

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.8G>A p.Cys3Tyr missense variant moderate contig1772 2082234

IGV: Start, Jump

G/A
NGS:
0.057
C90:
0.000
CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.212 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.215 Unknown--Cherry Wine---005- (RSP11272)
  3. 0.221 Cherry Blossom (RSP11322)
  4. 0.221 Cherry Blossom (RSP11321)
  5. 0.231 13 Cherries (RSP11442)
  6. 0.239 UP Sunrise (RSP10989)
  7. 0.243 Cherry Blossom (RSP11327)
  8. 0.244 Cherry Blossom (RSP11331)
  9. 0.245 Cherry Blossom (RSP11313)
  10. 0.246 Cherry Blossom (RSP11332)
  11. 0.252 Cherry Blossom (RSP11320)
  12. 0.255 Blue Dream (RSP11010)
  13. 0.257 Cherry Blossom (RSP11323)
  14. 0.259 Cherry Blossom (RSP11300)
  15. 0.259 Unknown--Cherry Wine---002- (RSP11269)
  16. 0.260 Cherry Blossom (RSP11309)
  17. 0.267 Cherry Blossom (RSP11325)
  18. 0.272 Cherry Blossom (RSP11315)
  19. 0.273 Super Blue Dream (RSP11011)
  20. 0.273 Cherry Blossom (RSP11328)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.234 UP Sunrise (RSP10989)
  2. 0.313 Cherry (RSP11143)
  3. 0.322 Cbot-2019-001 (RSP11129)
  4. 0.339 Blue Dream (RSP11033)
  5. 0.344 Liberty Haze (RSP11000)
  6. 0.347 Cbot-2019-005 (RSP11133)
  7. 0.355 Durban Poison (RSP11014)
  8. 0.358 RKM-2018-028 (RSP11120)
  9. 0.364 Cbot-2019-004 (RSP11132)
  10. 0.365 Gold Cracker (RSP11048)
  11. 0.369 RKM-2018-009 (RSP11100)
  12. 0.373 RKM-2018-006 (RSP11097)
  13. 0.375 Cherry (RSP11142)
  14. 0.379 Blueberry Cheesecake (RSP10684)
  15. 0.381 Sour Raspberry (RSP10551)
  16. 0.384 Golden Goat 2 (RSP10991)
  17. 0.385 CST (RSP11002)
  18. 0.387 Kimbo Slice (RSP10997)
  19. 0.390 Queen Jesus (RSP10105)
  20. 0.393 RKM-2018-033 (RSP11125)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.493 RKM-2018-022 (RSP11114)
  2. 0.486 R3in134 (SRR14708220)
  3. 0.482 Rugburn OG (RSP11353)
  4. 0.479 GMO x Zkittlez #43 (RSP11976)
  5. 0.478 Red Eye OG (RSP11190)
  6. 0.476 BagSeed (RSP12627)
  7. 0.475 New York City Deisel (RSP11225)
  8. 0.474 RKM-2018-013 (RSP11104)
  9. 0.474 Sour D (RSP11343)
  10. 0.472 BagSeed (RSP12501)
  11. 0.471 R1in136 (SRR14708227)
  12. 0.470 R1in136 (SRR14708237)
  13. 0.469 Candy Kush (RSP11492)
  14. 0.468 R3in134 (SRR14708219)
  15. 0.465 Hawaii Maui Waui (SRR14708262)
  16. 0.465 SourD (RSP12092)
  17. 0.465 Star Dawg (RSP11352)
  18. 0.464 VIR 483 (SRR14708239)
  19. 0.464 Feral (RSP11206)
  20. 0.463 Swiss Dream (RSP11408)

Most genetically distant strains (Base Tree)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.503 RKM-2018-022 (RSP11114)
  2. 0.475 Pie Hoe (RSP11073)
  3. 0.467 RKM-2018-002 (RSP11093)
  4. 0.466 Skywalker OG (RSP10837)
  5. 0.466 Monoica (RSP10241)
  6. 0.463 RKM-2018-034 (RSP11126)
  7. 0.463 Kush Hemp E1 (RSP11128)
  8. 0.461 RKM-2018-026 (RSP11118)
  9. 0.454 RKM-2018-019 (RSP11111)
  10. 0.449 Feral (RSP10890)
  11. 0.449 Futura 75 (RSP10664)
  12. 0.447 Kyrgyz Gold (RSP11054)
  13. 0.446 The Gift (RSP10988)
  14. 0.439 KYRG-11 (RSP11051)
  15. 0.439 Black Beauty (RSP11035)
  16. 0.439 Carmagnola (RSP10979)
  17. 0.432 Jiangji (RSP10653)
  18. 0.431 Fedora 17 (RSP10661)
  19. 0.429 Carmagnola (RSP11037)
  20. 0.427 Santhica27 (RSP11047)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346573
Overlapping SNPs:
65
Concordance:
45

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495242
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
ae4b7e4f5365754e94f131a7da41881d91b0c0ffd5e501789471f10660d17e02
Stamping Certificate
Download PDF (828.3 KB)
SHASUM Hash
5042b9d8da5406f37a92651ce0a77fc644fb69fa6c71c9aacaf45074422e9c7a
QR code for RSP11301

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