Cherry Blossom
RSP 11309
Grower: Yabba Cannaba
General Information
- Sample Name
- CK1
- Accession Date
- October 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.133 Unknown- Cherry Wine - 003 (RSP11270)
- 0.147 Cherry Blossom (RSP11320)
- 0.154 Cherry Blossom (RSP11298)
- 0.174 Cherry Blossom (RSP11328)
- 0.175 Unknown- Cherry Wine - 005 (RSP11272)
- 0.185 Cherry Blossom (RSP11332)
- 0.187 Unknown- Cherry Wine - 002 (RSP11269)
- 0.195 Cherry Blossom (RSP11312)
- 0.216 Cherry Blossom (RSP11300)
- 0.226 Cherry Blossom (RSP11310)
- 0.227 Cherry Blossom CBG (RSP11303)
- 0.236 Cherry Blossom (RSP11313)
- 0.238 Cherry Blossom (RSP11330)
- 0.240 Cherry Blossom (RSP11301)
- 0.242 Cherry Wine (RSP11145)
- 0.256 Cherry Blossom (RSP11314)
- 0.263 Cherry Blossom (RSP11317)
- 0.264 Cherry Blossom (RSP11304)
- 0.269 Cherry Blossom (RSP11316)
- 0.270 Cherry Blossom (RSP11319)
Nearest genetic relatives (Base Tree)
- 0.317 Liberty Haze (RSP11000)
- 0.320 Cherry (RSP11142)
- 0.325 UP Sunrise (RSP10989)
- 0.327 Blueberry Cheesecake (RSP10684)
- 0.350 Durban Poison (RSP11014)
- 0.370 RKM-2018-003 (RSP11094)
- 0.379 RKM-2018-031 (RSP11123)
- 0.383 Recon (RSP10755)
- 0.384 Cherry (RSP11143)
- 0.384 RKM-2018-020 (RSP11112)
- 0.385 Cbot-2019-001 (RSP11129)
- 0.386 RKM-2018-033 (RSP11125)
- 0.392 Tisza (RSP10659)
- 0.392 Kimbo Slice (RSP10997)
- 0.393 RKM-2018-029 (RSP11121)
- 0.394 Cbot-2019-006 (RSP11134)
- 0.394 Tisza (RSP11044)
- 0.396 Jiangji (RSP10653)
- 0.396 Tygra (RSP10667)
- 0.397 Cbot-2019-004 (RSP11132)
Most genetically distant strains (All Samples)
- 0.485 RKM-2018-022 (RSP11114)
- 0.475 Danny Noonan (RSP11070)
- 0.472 Abacus (RSP11266)
- 0.472 Kush Hemp E1 (RSP11128)
- 0.470 Queen Dream CBG (RSP11287)
- 0.461 Red Eye OG (RSP11190)
- 0.458 RKM-2018-019 (RSP11111)
- 0.458 White Label 1 (RSP11336)
- 0.454 RKM-2018-034 (RSP11126)
- 0.454 Escape Velocity (RSP11165)
- 0.454 Tangerine Haze (RSP10995)
- 0.453 Pure Power Plant (RSP11265)
- 0.452 Hermaphrodite Research Sample1 (RSP11049)
- 0.452 Green Crack (RSP11339)
- 0.449 RKM-2018-026 (RSP11118)
- 0.449 MENDO BREATH (RSP11242)
- 0.448 Queen Dream CBG (RSP11282)
- 0.448 Jacks Cleaner (RSP11347)
- 0.448 Sour D (RSP11343)
- 0.448 Chem 91 (RSP11185)
Most genetically distant strains (Base Tree)
- 0.495 RKM-2018-022 (RSP11114)
- 0.482 Kush Hemp E1 (RSP11128)
- 0.469 RKM-2018-019 (RSP11111)
- 0.463 Hermaphrodite Research Sample1 (RSP11049)
- 0.458 RKM-2018-034 (RSP11126)
- 0.456 RKM-2018-018 (RSP11110)
- 0.455 Sour Raspberry (RSP10551)
- 0.454 JL yellow (RSP11075)
- 0.452 RKM-2018-026 (RSP11118)
- 0.446 RKM-2018-002 (RSP11093)
- 0.446 RKM-2018-006 (RSP11097)
- 0.445 Black Beauty (RSP11035)
- 0.440 Ivory (RSP10668)
- 0.438 RKM-2018-028 (RSP11120)
- 0.436 Italian Kiss (RSP11034)
- 0.435 Skywalker OG (RSP10837)
- 0.434 Pie Hoe (RSP11073)
- 0.433 Blue Dream (RSP11033)
- 0.430 RKM-2018-032 (RSP11124)
- 0.429 Golden Goat 2 (RSP10991)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
2ddb87a49cb46626
9d842f9e2b08a087 9650f095c6df97a1 472bf8ed032963ce - Stamping Certificate
- Download PDF (860.2 KB)
- SHASUM Hash
-
26cd5e46a5227886
47edb7f6b092c2b2 0e1bc07651cc0f6e 4e586aaf077ca511