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Cherry Blossom

RSP 11312

Grower: Yabba Cannaba

General Information

Sample Name
CJ7
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.06%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0448
male female RSP11312

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.139 Cherry Blossom (RSP11319)
  2. 0.145 Unknown- Cherry Wine - 003 (RSP11270)
  3. 0.149 Cherry Blossom (RSP11298)
  4. 0.159 Cherry Blossom (RSP11320)
  5. 0.166 Cherry Blossom (RSP11300)
  6. 0.184 Cherry Blossom (RSP11316)
  7. 0.195 Cherry Blossom (RSP11309)
  8. 0.216 Unknown- Cherry Wine - 005 (RSP11272)
  9. 0.218 Cherry Blossom (RSP11299)
  10. 0.222 Cherry Blossom (RSP11304)
  11. 0.230 Cherry Wine (RSP11305)
  12. 0.230 Cherry Wine (RSP11307)
  13. 0.231 Cherry Blossom (RSP11332)
  14. 0.234 Avidekel (RSP10938)
  15. 0.236 RAPHAEL 4 (RSP11173)
  16. 0.241 Unknown- Cherry Wine - 002 (RSP11269)
  17. 0.247 Cherry Blossom (RSP11311)
  18. 0.250 Cbot-2019-003 (RSP11131)
  19. 0.250 Blueberry Cheesecake (RSP10684)
  20. 0.252 Otto (RSP11147)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.260 Blueberry Cheesecake (RSP10684)
  2. 0.294 Liberty Haze (RSP11000)
  3. 0.322 Cbot-2019-001 (RSP11129)
  4. 0.330 Durban Poison (RSP11014)
  5. 0.334 Cbot-2019-004 (RSP11132)
  6. 0.340 UP Sunrise (RSP10989)
  7. 0.355 QUEEN JESUS (RSP10105)
  8. 0.358 RKM-2018-003 (RSP11094)
  9. 0.359 Cherry (RSP11143)
  10. 0.373 Blueberry Cheesecake (RSP10672)
  11. 0.373 Cherry (RSP11142)
  12. 0.383 RKM-2018-020 (RSP11112)
  13. 0.384 RKM-2018-031 (RSP11123)
  14. 0.384 Cbot-2019-005 (RSP11133)
  15. 0.386 Golden Goat 2 (RSP10991)
  16. 0.386 RKM-2018-023 (RSP11115)
  17. 0.389 RKM-2018-005 (RSP11096)
  18. 0.392 Cbot-2019-006 (RSP11134)
  19. 0.395 RKM-2018-029 (RSP11121)
  20. 0.397 Kimbo Slice (RSP10997)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.487 80E (RSP11213)
  2. 0.487 Abacus (RSP11266)
  3. 0.482 White Label 1 (RSP11336)
  4. 0.482 RKM-2018-026 (RSP11118)
  5. 0.479 JL yellow (RSP11075)
  6. 0.473 80E (RSP11211)
  7. 0.468 USO31 (RSP10233)
  8. 0.466 JL 4th Gen 2 (RSP11194)
  9. 0.466 Red Eye OG (RSP11190)
  10. 0.464 Feral (RSP10892)
  11. 0.463 OR (RSP10940)
  12. 0.463 Santhica27 (RSP11047)
  13. 0.463 Chem 91 (RSP11185)
  14. 0.462 Rugburn OG (RSP11353)
  15. 0.461 USO 31 (RSP10983)
  16. 0.461 80E (RSP11212)
  17. 0.460 Diana (RSP10235)
  18. 0.460 Feral (RSP11205)
  19. 0.459 Monoica (RSP10241)
  20. 0.456 Carmaleonte (RSP11207)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.483 RKM-2018-026 (RSP11118)
  2. 0.483 JL yellow (RSP11075)
  3. 0.462 Santhica27 (RSP11047)
  4. 0.462 Sour Raspberry (RSP10551)
  5. 0.462 Ivory (RSP10668)
  6. 0.460 Monoica (RSP10241)
  7. 0.457 Skywalker OG (RSP10837)
  8. 0.453 Kush Hemp E1 (RSP11128)
  9. 0.451 Carmagnola (RSP11037)
  10. 0.450 Fedora 17 (RSP10661)
  11. 0.449 Blue Dream (RSP11033)
  12. 0.446 Carmagnola (RSP10979)
  13. 0.446 Feral (RSP10890)
  14. 0.445 KYRG-11 (RSP11051)
  15. 0.445 Kyrgyz Gold (RSP11054)
  16. 0.445 USO 31 (RSP10981)
  17. 0.443 Futura 75 (RSP10664)
  18. 0.441 Tisza (RSP11044)
  19. 0.441 RKM-2018-034 (RSP11126)
  20. 0.439 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
66
Concordance:
45

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495257
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
a8ef1c8b09d14b54ab55706bdfdb15d411d6540fe93824d69c3e89fc267742df
Stamping Certificate
Download PDF (842.2 KB)
SHASUM Hash
5be24de4d776784d5123341575a368c295407e7052d7ad7409e4c42a32f42919
QR code for RSP11312

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