Cherry Blossom

RSP 11315

Grower: Yabba Cannaba

General Information

Sample Name
CD5
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.01%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0442
male female RSP11315

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.078 Cherry Blossom (RSP11325)
  2. 0.124 Cherry Blossom (RSP11306)
  3. 0.145 Cherry Blossom (RSP11329)
  4. 0.163 Cherry Blossom (RSP11299)
  5. 0.164 Cherry Blossom (RSP11327)
  6. 0.174 Unknown- Cherry Wine - 005 (RSP11272)
  7. 0.178 Cherry Blossom (RSP11316)
  8. 0.184 Unknown- Cherry Wine - 004 (RSP11271)
  9. 0.210 Cherry Blossom CBG (RSP11303)
  10. 0.220 Cherry Blossom (RSP11320)
  11. 0.221 Cherry Blossom (RSP11322)
  12. 0.225 Cherry Blossom (RSP11331)
  13. 0.225 Serious Happiness (RSP10763)
  14. 0.225 Cherry Blossom (RSP11319)
  15. 0.229 Cherry Wine (RSP11307)
  16. 0.230 Cherry Wine (RSP11305)
  17. 0.231 Midnight (RSP10941)
  18. 0.233 Cherry Blossom (RSP11304)
  19. 0.235 FL30 (RSP11361)
  20. 0.235 Doug s Varin (RSP11243)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.264 UP Sunrise (RSP10989)
  2. 0.269 Cbot-2019-004 (RSP11132)
  3. 0.280 Cbot-2019-001 (RSP11129)
  4. 0.298 Blueberry Cheesecake (RSP10684)
  5. 0.307 Durban Poison (RSP11014)
  6. 0.310 Liberty Haze (RSP11000)
  7. 0.326 RKM-2018-006 (RSP11097)
  8. 0.328 Cherry (RSP11143)
  9. 0.340 QUEEN JESUS (RSP10105)
  10. 0.348 Blue Dream (RSP11033)
  11. 0.349 Kimbo Slice (RSP10997)
  12. 0.349 Tygra (RSP10667)
  13. 0.350 Italian Kiss (RSP11034)
  14. 0.351 Recon (RSP10755)
  15. 0.354 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.357 RKM-2018-009 (RSP11100)
  17. 0.358 Sour Raspberry (RSP10551)
  18. 0.360 CST (RSP11002)
  19. 0.361 RKM-2018-003 (RSP11094)
  20. 0.363 Blueberry Cheesecake (RSP10680)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.481 80E (RSP11211)
  2. 0.480 80E (RSP11213)
  3. 0.477 Red Eye OG (RSP11190)
  4. 0.468 Star Dawg (RSP11352)
  5. 0.467 Garlic (RSP11341)
  6. 0.460 Rugburn OG (RSP11353)
  7. 0.459 Skywalker OG (RSP10837)
  8. 0.459 RKM-2018-026 (RSP11118)
  9. 0.457 Abacus (RSP11266)
  10. 0.456 White Label 1 (RSP11336)
  11. 0.452 JL 3rd Gen Father (RSP11196)
  12. 0.451 RKM-2018-002 (RSP11093)
  13. 0.445 Feral (RSP11205)
  14. 0.444 SFVxTK (RSP11072)
  15. 0.442 RKM-2018-012 (RSP11103)
  16. 0.442 JL 4th Gen 2 (RSP11194)
  17. 0.442 RKM-2018-013 (RSP11104)
  18. 0.440 501st OG (RSP11241)
  19. 0.439 Gorilla Cookies (RSP11231)
  20. 0.438 USO31 (RSP10233)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.470 Skywalker OG (RSP10837)
  2. 0.462 RKM-2018-026 (RSP11118)
  3. 0.450 RKM-2018-002 (RSP11093)
  4. 0.442 RKM-2018-022 (RSP11114)
  5. 0.423 RKM-2018-034 (RSP11126)
  6. 0.417 RKM-2018-019 (RSP11111)
  7. 0.417 Feral (RSP10890)
  8. 0.414 USO 31 (RSP10981)
  9. 0.414 Cbot-2019-006 (RSP11134)
  10. 0.414 Skunk 18 (RSP11038)
  11. 0.414 Monoica (RSP10241)
  12. 0.412 Santhica27 (RSP11047)
  13. 0.411 Kush Hemp E1 (RSP11128)
  14. 0.411 Jiangji (RSP10653)
  15. 0.410 Pie Hoe (RSP11073)
  16. 0.410 Tisza (RSP11044)
  17. 0.409 Cbot-2019-005 (RSP11133)
  18. 0.407 JL yellow (RSP11075)
  19. 0.407 Carmagnola (RSP10979)
  20. 0.405 Black Beauty (RSP11035)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346914
Overlapping SNPs:
64
Concordance:
36

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495217
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
ca0d7f12a1267e398972c490d5ef8b440eca1f9a85504331afe97853509b5d78
Stamping Certificate
Download PDF (852.2 KB)
SHASUM Hash
14ffccb73d521d3d6fdd66d9c32c594b9d1f1036d5adb99fb5d41b7ddbbd221d
QR code for RSP11315

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