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Cherry Blossom

RSP 11315

Grower: Yabba Cannaba

General Information

Sample Name
CD5
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.01%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0442
male female RSP11315

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.070 Cherry Blossom (RSP11325)
  2. 0.116 Cherry Blossom (RSP11306)
  3. 0.156 Cherry Blossom (RSP11299)
  4. 0.156 Unknown--Cherry Wine---005- (RSP11272)
  5. 0.163 Electra (RSP11366)
  6. 0.166 Cherry Blossom (RSP11316)
  7. 0.166 Cherry Blossom (RSP11329)
  8. 0.170 Cherry Blossom (RSP11327)
  9. 0.186 Unknown--Cherry Wine---004- (RSP11271)
  10. 0.188 Lift (RSP11378)
  11. 0.200 Calm (RSP11379)
  12. 0.201 Sparrow (RSP11443)
  13. 0.201 Cherry Blossom (RSP11320)
  14. 0.205 Cherry Blossom CBG (RSP11303)
  15. 0.207 Doug s Varin (RSP11243)
  16. 0.209 Cherry Blossom (RSP11322)
  17. 0.213 Joy (RSP11380)
  18. 0.215 Cherry Blossom (RSP11319)
  19. 0.215 Serious Happiness (RSP10763)
  20. 0.216 Lifter (RSP11365)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.243 UP Sunrise (RSP10989)
  2. 0.280 Cbot-2019-004 (RSP11132)
  3. 0.280 Cbot-2019-001 (RSP11129)
  4. 0.297 Liberty Haze (RSP11000)
  5. 0.307 Blueberry Cheesecake (RSP10684)
  6. 0.311 RKM-2018-006 (RSP11097)
  7. 0.323 Durban Poison (RSP11014)
  8. 0.325 Tygra (RSP10667)
  9. 0.331 Blue Dream (RSP11033)
  10. 0.332 Hermaphrodite Research Sample1 (RSP11049)
  11. 0.338 Cherry (RSP11143)
  12. 0.338 Italian Kiss (RSP11034)
  13. 0.340 Sour Raspberry (RSP10551)
  14. 0.340 Blueberry Cheesecake (RSP10680)
  15. 0.340 Kimbo Slice (RSP10997)
  16. 0.343 Queen Jesus (RSP10105)
  17. 0.343 RKM-2018-009 (RSP11100)
  18. 0.347 Recon (RSP10755)
  19. 0.347 CST (RSP11002)
  20. 0.347 RKM-2018-003 (RSP11094)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.466 Fatso (RSP11741)
  2. 0.458 Red Eye OG (RSP11190)
  3. 0.457 Star Dawg (RSP11352)
  4. 0.456 80E (RSP11211)
  5. 0.453 80E (RSP11213)
  6. 0.451 CHEM4 (RSP12090)
  7. 0.451 BagSeed (RSP12501)
  8. 0.447 Juicy Gummy x Royal Kush (RSP12484)
  9. 0.446 Skywalker OG (RSP10837)
  10. 0.444 Right Mark (RSP11628)
  11. 0.443 Garlic (RSP11341)
  12. 0.441 BagSeed (RSP12627)
  13. 0.441 R3in134 (SRR14708220)
  14. 0.438 R3in134 (SRR14708218)
  15. 0.438 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  16. 0.438 White Label 1 (RSP11336)
  17. 0.438 Rugburn OG (RSP11353)
  18. 0.437 Abacus (RSP11266)
  19. 0.436 Cherry Lime Runtz (RSP12486)
  20. 0.436 East side OG (RSP12089)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.461 Skywalker OG (RSP10837)
  2. 0.447 RKM-2018-002 (RSP11093)
  3. 0.443 RKM-2018-026 (RSP11118)
  4. 0.435 RKM-2018-022 (RSP11114)
  5. 0.427 Skunk#18 (RSP11038)
  6. 0.415 Cbot-2019-005 (RSP11133)
  7. 0.410 Cbot-2019-006 (RSP11134)
  8. 0.410 RKM-2018-019 (RSP11111)
  9. 0.407 Kush Hemp E1 (RSP11128)
  10. 0.405 Monoica (RSP10241)
  11. 0.405 RKM-2018-034 (RSP11126)
  12. 0.404 Jiangji (RSP10653)
  13. 0.400 Feral (RSP10890)
  14. 0.398 Pie Hoe (RSP11073)
  15. 0.398 Santhica27 (RSP11047)
  16. 0.397 RKM-2018-033 (RSP11125)
  17. 0.395 JL yellow (RSP11075)
  18. 0.394 KYRG-11 (RSP11051)
  19. 0.393 Black Beauty (RSP11035)
  20. 0.393 Hermaphrodite ResearchSample2 (RSP11050)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346914
Overlapping SNPs:
64
Concordance:
36

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495217
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
ca0d7f12a1267e398972c490d5ef8b440eca1f9a85504331afe97853509b5d78
Stamping Certificate
Download PDF (852.2 KB)
SHASUM Hash
14ffccb73d521d3d6fdd66d9c32c594b9d1f1036d5adb99fb5d41b7ddbbd221d
QR code for RSP11315

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