Cherry Blossom

RSP 11317

Grower: Yabba Cannaba

General Information

Sample Name
CI2
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.19%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0585
male female RSP11317

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.171 Unknown- Cherry Wine - 005 (RSP11272)
  2. 0.183 Cherry Blossom (RSP11324)
  3. 0.183 Cherry Blossom (RSP11330)
  4. 0.204 Cherry Blossom (RSP11333)
  5. 0.211 Cherry Blossom (RSP11326)
  6. 0.220 Cherry Blossom (RSP11314)
  7. 0.220 Cherry Blossom (RSP11313)
  8. 0.224 Cherry Blossom (RSP11335)
  9. 0.228 Cherry Blossom (RSP11308)
  10. 0.229 Cherry Blossom (RSP11332)
  11. 0.232 Cherry Blossom (RSP11304)
  12. 0.235 Unknown- Cherry Wine - 004 (RSP11271)
  13. 0.245 Cherry Blossom (RSP11322)
  14. 0.248 Cherry Blossom CBG (RSP11303)
  15. 0.251 Cherry Blossom (RSP11306)
  16. 0.251 Cherry Blossom (RSP11320)
  17. 0.263 Cherry Blossom (RSP11309)
  18. 0.268 Cherry Wine (RSP11145)
  19. 0.275 Cherry (RSP11142)
  20. 0.276 Cherry Blossom (RSP11327)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.288 Cherry (RSP11142)
  2. 0.310 Recon (RSP10755)
  3. 0.330 Liberty Haze (RSP11000)
  4. 0.341 KYRG-11 (RSP11051)
  5. 0.342 UP Sunrise (RSP10989)
  6. 0.344 Tisza (RSP10659)
  7. 0.350 Kyrgyz Gold (RSP11054)
  8. 0.353 Blueberry Cheesecake (RSP10684)
  9. 0.356 Tygra (RSP10667)
  10. 0.359 Kimbo Slice (RSP10997)
  11. 0.360 Monoica (RSP10241)
  12. 0.362 Carmagnola (RSP11037)
  13. 0.363 USO 31 (RSP10981)
  14. 0.364 Lovrin (RSP10658)
  15. 0.370 Futura 75 (RSP10664)
  16. 0.371 RKM-2018-031 (RSP11123)
  17. 0.373 Cbot-2019-001 (RSP11129)
  18. 0.373 Durban Poison (RSP11014)
  19. 0.374 Santhica27 (RSP11047)
  20. 0.377 Tisza (RSP11044)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.527 Danny Noonan (RSP11070)
  2. 0.499 TI (RSP11149)
  3. 0.496 Chem 91 (RSP11185)
  4. 0.494 RKM-2018-002 (RSP11093)
  5. 0.491 RKM-2018-028 (RSP11120)
  6. 0.484 JL yellow (RSP11075)
  7. 0.482 Skunk 18 (RSP11038)
  8. 0.478 JL 3rd Gen Mother (RSP11214)
  9. 0.477 T S A G E (RSP11351)
  10. 0.476 Skunk 18 (RSP11030)
  11. 0.474 JL 3rd Gen Mother (RSP11197)
  12. 0.474 Cherry Blossom (RSP11323)
  13. 0.471 RKM-2018-018 (RSP11110)
  14. 0.470 JL 4th Gen 2 (RSP11194)
  15. 0.469 JL 4th Gen 5 (RSP11199)
  16. 0.465 RKM-2018-023 (RSP11115)
  17. 0.461 Black Beauty (RSP11035)
  18. 0.460 RKM-2018-030 (RSP11122)
  19. 0.460 Sour Raspberry (RSP10551)
  20. 0.458 JL 4th Gen 1 (RSP11193)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.495 RKM-2018-028 (RSP11120)
  2. 0.490 JL yellow (RSP11075)
  3. 0.487 Skunk 18 (RSP11038)
  4. 0.481 RKM-2018-002 (RSP11093)
  5. 0.472 RKM-2018-018 (RSP11110)
  6. 0.465 RKM-2018-023 (RSP11115)
  7. 0.463 Sour Raspberry (RSP10551)
  8. 0.460 Black Beauty (RSP11035)
  9. 0.454 Cbot-2019-004 (RSP11132)
  10. 0.448 Hermaphrodite Research Sample1 (RSP11049)
  11. 0.447 RKM-2018-005 (RSP11096)
  12. 0.447 CST (RSP11002)
  13. 0.445 RKM-2018-009 (RSP11100)
  14. 0.444 Kush Hemp E1 (RSP11128)
  15. 0.444 RKM-2018-006 (RSP11097)
  16. 0.442 RKM-2018-032 (RSP11124)
  17. 0.439 Golden Goat 2 (RSP10991)
  18. 0.439 Cbot-2019-005 (RSP11133)
  19. 0.437 Blue Dream (RSP11033)
  20. 0.430 RKM-2018-033 (RSP11125)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448289
Overlapping SNPs:
64
Concordance:
35

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
805e46b54dde68864df80c9510e3daa9f97f8911978df73119a36b7c65c377b6
Stamping Certificate
Download PDF (855.3 KB)
SHASUM Hash
75bf27fde3ef31c7b346104c81a354356791edc2aa658720b4fdf2bc3ea828cc
QR code for RSP11317

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