Cherry Blossom

RSP 11320

Grower: Yabba Cannaba

General Information

Sample Name
CA9
Accession Date
October 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.15%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0525
male female RSP11320

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.103 Unknown--Cherry Wine---005- (RSP11272)
  2. 0.104 Cherry Blossom (RSP11316)
  3. 0.105 Cherry Blossom (RSP11319)
  4. 0.117 Cherry Blossom (RSP11332)
  5. 0.122 Cherry Blossom (RSP11274)
  6. 0.126 Cherry Blossom (RSP11304)
  7. 0.142 Cherry Blossom (RSP11314)
  8. 0.143 Unknown--Cherry Wine---002- (RSP11269)
  9. 0.149 Blueberry Cheesecake (RSP10684)
  10. 0.149 Cherry Blossom (RSP11300)
  11. 0.150 Cherry Blossom (RSP11299)
  12. 0.154 Electra (RSP11366)
  13. 0.156 Cherry Blossom (RSP11309)
  14. 0.156 Cherry Blossom (RSP11321)
  15. 0.164 Cherry Blossom (RSP11312)
  16. 0.166 Badger (RSP11614)
  17. 0.167 Cherry Blossom (RSP11313)
  18. 0.173 Cherry Blossom CBG (RSP11303)
  19. 0.173 Cherry Blossom (RSP11327)
  20. 0.174 Lift (RSP11378)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.202 Blueberry Cheesecake (RSP10684)
  2. 0.237 Liberty Haze (RSP11000)
  3. 0.275 Durban Poison (RSP11014)
  4. 0.283 Queen Jesus (RSP10105)
  5. 0.289 UP Sunrise (RSP10989)
  6. 0.306 RKM-2018-031 (RSP11123)
  7. 0.310 Cbot-2019-004 (RSP11132)
  8. 0.311 Recon (RSP10755)
  9. 0.311 Cherry (RSP11142)
  10. 0.313 Blueberry Cheesecake (RSP10672)
  11. 0.319 Cbot-2019-001 (RSP11129)
  12. 0.327 Tisza (RSP10659)
  13. 0.328 Gold Cracker (RSP11048)
  14. 0.332 RKM-2018-004 (RSP11096)
  15. 0.333 CST (RSP11002)
  16. 0.333 Kimbo Slice (RSP10997)
  17. 0.338 Hermaphrodite ResearchSample2 (RSP11050)
  18. 0.341 Cherry (RSP11143)
  19. 0.346 Cbot-2019-005 (RSP11133)
  20. 0.349 Golden Goat 2 (RSP10991)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.432 Chem 91 (RSP11185)
  2. 0.432 R1in136 (SRR14708226)
  3. 0.431 JL 3rd Gen Father (RSP11196)
  4. 0.424 White Label 1 (RSP11336)
  5. 0.423 JL yellow (RSP11075)
  6. 0.422 Abacus (RSP11266)
  7. 0.418 Garlic (RSP11341)
  8. 0.417 Star Dawg (RSP11352)
  9. 0.417 BagSeed (RSP12501)
  10. 0.416 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  11. 0.414 Fatso (RSP11741)
  12. 0.413 Bialobrzeskie (SRR14708244)
  13. 0.411 R1in136 (SRR14708227)
  14. 0.410 JL 4th Gen 5 (RSP11199)
  15. 0.410 Kush Hemp E1 (RSP11128)
  16. 0.410 R1in136 (SRR14708237)
  17. 0.409 Juso14 (SRR14708259)
  18. 0.409 80E (RSP11213)
  19. 0.408 R3in134 (SRR14708218)
  20. 0.408 Santhica 27 (SRR14708211)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.419 JL yellow (RSP11075)
  2. 0.414 RKM-2018-026 (RSP11118)
  3. 0.413 Kush Hemp E1 (RSP11128)
  4. 0.409 RKM-2018-022 (RSP11114)
  5. 0.408 RKM-2018-002 (RSP11093)
  6. 0.405 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.404 RKM-2018-009 (RSP11100)
  8. 0.404 RKM-2018-018 (RSP11110)
  9. 0.396 Skunk#18 (RSP11038)
  10. 0.395 Lovrin (RSP10658)
  11. 0.392 Italian Kiss (RSP11034)
  12. 0.390 USO 31 (RSP10981)
  13. 0.388 Ivory (RSP10668)
  14. 0.388 Skywalker OG (RSP10837)
  15. 0.386 Carmagnola (RSP11037)
  16. 0.385 RKM-2018-034 (RSP11126)
  17. 0.385 RKM-2018-028 (RSP11120)
  18. 0.383 KYRG-11 (RSP11051)
  19. 0.382 Blue Dream (RSP11033)
  20. 0.382 Feral (RSP10890)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349179
Overlapping SNPs:
56
Concordance:
37

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495179
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
d9465503e2d946c9ae6352630ee9066293dc71b167ef41677ef8ccaaa9def426
Stamping Certificate
Download PDF (857.2 KB)
SHASUM Hash
28f18672700ae2c65380ae23729a73de1e640e5219453d7a30e846bdeca8701e
QR code for RSP11320

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