Cherry Blossom

RSP 11322

Grower: Yabba Cannaba

General Information

Sample Name
CK7
Accession Date
October 17, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.05%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0499
male female RSP11322

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.556A>G p.Arg186Gly missense variant & splice region variant moderate contig700 2721117

IGV: Start, Jump

T/C
NGS:
0.022
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.324A>C p.Glu108Asp missense variant moderate contig700 2721349

IGV: Start, Jump

T/G
NGS:
0.094
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
FAD2-2

UniProt

c.110C>T p.Ala37Val missense variant moderate contig83 1803259

IGV: Start, Jump

G/A
NGS:
0.013
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.744+1_744+19delGTAATTTATTTTATTATAA splice donor variant & splice region variant & intron variant high contig121 2831022

IGV: Start, Jump

GGTAATTTATTTTATTATAA/G
NGS:
0.096
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.135 Cherry Blossom (RSP11306)
  2. 0.139 Cherry Blossom (RSP11313)
  3. 0.153 Unknown- Cherry Wine - 005 (RSP11272)
  4. 0.156 Cherry Blossom (RSP11304)
  5. 0.177 Cherry Blossom (RSP11327)
  6. 0.192 Cherry Blossom (RSP11330)
  7. 0.194 Cherry Blossom (RSP11329)
  8. 0.197 Cherry Blossom (RSP11320)
  9. 0.211 Cherry Blossom (RSP11332)
  10. 0.213 Cherry Blossom (RSP11301)
  11. 0.214 Cherry Blossom (RSP11325)
  12. 0.220 Cherry Blossom (RSP11333)
  13. 0.221 Cherry Blossom (RSP11315)
  14. 0.228 Cherry Blossom CBG (RSP11303)
  15. 0.233 Cherry Blossom (RSP11326)
  16. 0.236 Cherry Blossom (RSP11299)
  17. 0.242 Cherry Blossom (RSP11324)
  18. 0.243 UP Sunrise (RSP10989)
  19. 0.245 Cherry Blossom (RSP11317)
  20. 0.246 Blue Dream (RSP11010)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.248 UP Sunrise (RSP10989)
  2. 0.280 Cbot-2019-001 (RSP11129)
  3. 0.303 Liberty Haze (RSP11000)
  4. 0.320 Blueberry Cheesecake (RSP10684)
  5. 0.331 Blue Dream (RSP11033)
  6. 0.336 RKM-2018-031 (RSP11123)
  7. 0.343 Cherry (RSP11143)
  8. 0.343 RKM-2018-009 (RSP11100)
  9. 0.344 Italian Kiss (RSP11034)
  10. 0.344 Durban Poison (RSP11014)
  11. 0.348 Cherry (RSP11142)
  12. 0.350 Kimbo Slice (RSP10997)
  13. 0.350 Sour Raspberry (RSP10551)
  14. 0.351 Recon (RSP10755)
  15. 0.352 RKM-2018-006 (RSP11097)
  16. 0.353 Gold Cracker (RSP11048)
  17. 0.354 Hermaphrodite ResearchSample2 (RSP11050)
  18. 0.362 QUEEN JESUS (RSP10105)
  19. 0.366 CST (RSP11002)
  20. 0.370 Hermaphrodite Research Sample1 (RSP11049)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.470 RKM-2018-002 (RSP11093)
  2. 0.465 Star Dawg (RSP11352)
  3. 0.455 Skunk 18 (RSP11030)
  4. 0.453 Skunk 18 (RSP11038)
  5. 0.452 RKM-2018-026 (RSP11118)
  6. 0.450 JABBA S STASH (RSP11348)
  7. 0.444 Flo (RSP11232)
  8. 0.442 JL 3rd Gen Father (RSP11196)
  9. 0.441 Arcata Trainwreck (RSP11176)
  10. 0.438 New York City Deisel (RSP11225)
  11. 0.437 Rugburn OG (RSP11353)
  12. 0.437 Square Wave (RSP11344)
  13. 0.435 RKM-2018-012 (RSP11103)
  14. 0.433 Cbot-2019-005 (RSP11133)
  15. 0.433 USO31 (RSP10233)
  16. 0.432 JL 4th Gen 1 (RSP11193)
  17. 0.432 Carmaleonte (RSP11207)
  18. 0.432 Sour D (RSP11343)
  19. 0.430 Feral (RSP11205)
  20. 0.430 Gorilla Cookies (RSP11231)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.472 RKM-2018-002 (RSP11093)
  2. 0.459 Skunk 18 (RSP11038)
  3. 0.449 RKM-2018-026 (RSP11118)
  4. 0.439 Cbot-2019-005 (RSP11133)
  5. 0.439 RKM-2018-022 (RSP11114)
  6. 0.432 RKM-2018-003 (RSP11094)
  7. 0.430 RKM-2018-034 (RSP11126)
  8. 0.430 Kush Hemp E1 (RSP11128)
  9. 0.427 Feral (RSP10890)
  10. 0.424 RKM-2018-033 (RSP11125)
  11. 0.423 RKM-2018-023 (RSP11115)
  12. 0.423 RKM-2018-020 (RSP11112)
  13. 0.423 RKM-2018-019 (RSP11111)
  14. 0.419 Santhica27 (RSP11047)
  15. 0.417 Pie Hoe (RSP11073)
  16. 0.416 USO 31 (RSP10981)
  17. 0.413 Fedora 17 (RSP10661)
  18. 0.413 RKM-2018-005 (RSP11096)
  19. 0.412 Blueberry Cheesecake (RSP10680)
  20. 0.411 JL yellow (RSP11075)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346625
Overlapping SNPs:
65
Concordance:
39

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495321
Overlapping SNPs:
7
Concordance:
6

Blockchain Registration Information

Transaction ID
b7c164ac5e3abf624d42a79cd379cd78a8e1e0b021fd24e84c798992b1ade443
Stamping Certificate
Download PDF (850.8 KB)
SHASUM Hash
64c0078182ddd2bba6e599337ebc8588e7bf2a8130154753ebb477ad8289b6e8
QR code for RSP11322

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