Cherry Blossom
RSP 11327
Grower: Yabba Cannaba
General Information
- Sample Name
- CH3
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.556A>G | p.Arg186Gly | missense variant & splice region variant | moderate | contig700 | 2721117 | T/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.163 Cherry Blossom (RSP11304)
- 0.164 Cherry Blossom (RSP11315)
- 0.172 Cherry Blossom (RSP11320)
- 0.176 Cherry Blossom (RSP11274)
- 0.177 Cherry Blossom (RSP11322)
- 0.183 Unknown- Cherry Wine - 005 (RSP11272)
- 0.203 Cherry Blossom (RSP11299)
- 0.204 Cherry Blossom (RSP11308)
- 0.207 Cherry Blossom (RSP11335)
- 0.213 Cherry Blossom (RSP11323)
- 0.215 Cherry Blossom (RSP11321)
- 0.217 Cherry Blossom (RSP11331)
- 0.219 Cherry Blossom (RSP11313)
- 0.227 Cherry Blossom (RSP11301)
- 0.227 Cherry Blossom (RSP11311)
- 0.228 Cherry Blossom (RSP11325)
- 0.229 Doug s Varin (RSP11243)
- 0.230 Cherry Blossom (RSP11319)
- 0.231 Cherry Blossom (RSP11332)
- 0.231 RINGO S ANGEL (RSP10085)
Nearest genetic relatives (Base Tree)
- 0.280 UP Sunrise (RSP10989)
- 0.298 Cbot-2019-001 (RSP11129)
- 0.313 Blueberry Cheesecake (RSP10684)
- 0.316 QUEEN JESUS (RSP10105)
- 0.320 Liberty Haze (RSP11000)
- 0.328 Cherry (RSP11143)
- 0.349 Kimbo Slice (RSP10997)
- 0.351 Durban Poison (RSP11014)
- 0.361 Tygra (RSP10667)
- 0.367 Cbot-2019-004 (RSP11132)
- 0.368 RKM-2018-005 (RSP11096)
- 0.375 RKM-2018-028 (RSP11120)
- 0.378 Sour Raspberry (RSP10551)
- 0.379 RKM-2018-029 (RSP11121)
- 0.379 Recon (RSP10755)
- 0.380 Ivory (RSP10668)
- 0.382 KYRG-11 (RSP11051)
- 0.383 Blue Dream (RSP11033)
- 0.383 Italian Kiss (RSP11034)
- 0.386 Kyrgyz Gold (RSP11054)
Most genetically distant strains (All Samples)
- 0.491 White Label 1 (RSP11336)
- 0.481 80E (RSP11211)
- 0.479 80E (RSP11213)
- 0.463 80E (RSP11212)
- 0.462 RKM-2018-026 (RSP11118)
- 0.461 Abacus (RSP11266)
- 0.456 Star Dawg (RSP11352)
- 0.456 RKM-2018-002 (RSP11093)
- 0.455 Chem 91 (RSP11185)
- 0.455 Kush Hemp E1 (RSP11128)
- 0.441 Rugburn OG (RSP11353)
- 0.440 RKM-2018-012 (RSP11103)
- 0.438 Garlic (RSP11341)
- 0.437 RKM-2018-022 (RSP11114)
- 0.432 501st OG (RSP11241)
- 0.432 JL 4th Gen 6 (RSP11200)
- 0.430 USO31 (RSP10233)
- 0.430 UP Wendigo (RSP11261)
- 0.429 JL yellow (RSP11075)
- 0.429 RKM-2018-030 (RSP11122)
Most genetically distant strains (Base Tree)
- 0.476 Kush Hemp E1 (RSP11128)
- 0.463 RKM-2018-026 (RSP11118)
- 0.457 RKM-2018-002 (RSP11093)
- 0.456 RKM-2018-022 (RSP11114)
- 0.438 JL yellow (RSP11075)
- 0.435 Skywalker OG (RSP10837)
- 0.433 RKM-2018-023 (RSP11115)
- 0.429 Skunk 18 (RSP11038)
- 0.428 RKM-2018-034 (RSP11126)
- 0.421 Cbot-2019-005 (RSP11133)
- 0.420 Monoica (RSP10241)
- 0.419 RKM-2018-027 (RSP11119)
- 0.416 RKM-2018-032 (RSP11124)
- 0.414 Gold Cracker (RSP11048)
- 0.413 Pie Hoe (RSP11073)
- 0.411 Santhica27 (RSP11047)
- 0.411 Cherry (RSP11142)
- 0.410 RKM-2018-033 (RSP11125)
- 0.407 Black Beauty (RSP11035)
- 0.406 Cbot-2019-006 (RSP11134)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 62
- Concordance:
- 35
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
47cf22410bfe350d
cfe9d39ca8f19bc6 3371c5627b0d81e7 bcf1afa830cadee9 - Stamping Certificate
- Download PDF (850.3 KB)
- SHASUM Hash
-
0c9d3157b2012378
c517ff52ff8238d9 5c8b60db54da3866 8bd703dcaf2db9be