Cherry Blossom

RSP 11328

Grower: Yabba Cannaba

General Information

Sample Name
CK8
Accession Date
October 17, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.02%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0527
male female RSP11328

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.174 Cherry Blossom (RSP11332)
  2. 0.174 Cherry Blossom (RSP11309)
  3. 0.179 Cherry Blossom (RSP11310)
  4. 0.200 Cherry Blossom (RSP11330)
  5. 0.218 Unknown- Cherry Wine - 005 (RSP11272)
  6. 0.224 Unknown- Cherry Wine - 003 (RSP11270)
  7. 0.239 Cherry Blossom (RSP11334)
  8. 0.250 Cherry Blossom (RSP11321)
  9. 0.250 Unknown- Cherry Wine - 001 (RSP11268)
  10. 0.258 Cherry Blossom (RSP11301)
  11. 0.268 Cherry Blossom (RSP11320)
  12. 0.275 Cherry Wine (RSP11145)
  13. 0.276 Cherry Blossom (RSP11331)
  14. 0.278 Cherry Blossom (RSP11333)
  15. 0.281 Cherry Blossom (RSP11302)
  16. 0.282 Cherry Blossom (RSP11299)
  17. 0.283 Cherry Blossom (RSP11313)
  18. 0.288 Cherry Blossom (RSP11317)
  19. 0.288 Unknown- Cherry Wine - 002 (RSP11269)
  20. 0.289 Cherry Blossom (RSP11327)

Nearest genetic relatives (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.357 Cherry (RSP11143)
  2. 0.365 UP Sunrise (RSP10989)
  3. 0.374 Liberty Haze (RSP11000)
  4. 0.386 Cbot-2019-001 (RSP11129)
  5. 0.391 Blueberry Cheesecake (RSP10684)
  6. 0.394 Durban Poison (RSP11014)
  7. 0.401 Cherry (RSP11142)
  8. 0.402 RKM-2018-003 (RSP11094)
  9. 0.404 Tygra (RSP10667)
  10. 0.415 Kyrgyz Gold (RSP11054)
  11. 0.416 Carmagnola (RSP10979)
  12. 0.417 Jiangji (RSP10653)
  13. 0.420 RKM-2018-031 (RSP11123)
  14. 0.420 RKM-2018-033 (RSP11125)
  15. 0.420 RKM-2018-020 (RSP11112)
  16. 0.421 Kimbo Slice (RSP10997)
  17. 0.421 Tisza (RSP10659)
  18. 0.424 RKM-2018-005 (RSP11096)
  19. 0.427 Lovrin (RSP10658)
  20. 0.427 Recon (RSP10755)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
clone distance sibling distance more distant
  1. 0.537 Kush Hemp E1 (RSP11128)
  2. 0.516 RKM-2018-022 (RSP11114)
  3. 0.507 Queen Dream CBG (RSP11286)
  4. 0.493 Danny Noonan (RSP11070)
  5. 0.493 RKM-2018-018 (RSP11110)
  6. 0.491 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.486 Tangerine Haze (RSP10995)
  8. 0.486 RKM-2018-019 (RSP11111)
  9. 0.485 Jacks Cleaner (RSP11347)
  10. 0.485 Hermaphrodite Research Sample1 (RSP11042)
  11. 0.484 Abacus (RSP11266)
  12. 0.482 Chem 91 (RSP11185)
  13. 0.482 Pure Power Plant (RSP11265)
  14. 0.480 Arcata Trainwreck (RSP11176)
  15. 0.480 JL 3rd Gen Mother (RSP11214)
  16. 0.479 RKM-2018-034 (RSP11126)
  17. 0.478 Star Dawg (RSP11352)
  18. 0.478 RKM-2018-011 (RSP11102)
  19. 0.476 RKM-2018-006 (RSP11097)
  20. 0.476 MENDO BREATH (RSP11242)

Most genetically distant strains (Base Tree)

0 0.142 0.283 0.425 0.567
clone distance sibling distance more distant
  1. 0.550 Kush Hemp E1 (RSP11128)
  2. 0.532 RKM-2018-022 (RSP11114)
  3. 0.508 RKM-2018-018 (RSP11110)
  4. 0.505 Hermaphrodite Research Sample1 (RSP11049)
  5. 0.496 RKM-2018-034 (RSP11126)
  6. 0.493 RKM-2018-019 (RSP11111)
  7. 0.489 JL yellow (RSP11075)
  8. 0.488 RKM-2018-006 (RSP11097)
  9. 0.486 Italian Kiss (RSP11034)
  10. 0.485 Sour Raspberry (RSP10551)
  11. 0.483 Pie Hoe (RSP11073)
  12. 0.479 Blue Dream (RSP11033)
  13. 0.476 RKM-2018-026 (RSP11118)
  14. 0.475 RKM-2018-009 (RSP11100)
  15. 0.474 Cbot-2019-004 (RSP11132)
  16. 0.473 Golden Goat 2 (RSP10991)
  17. 0.473 RKM-2018-002 (RSP11093)
  18. 0.471 Black Beauty (RSP11035)
  19. 0.471 RKM-2018-028 (RSP11120)
  20. 0.468 RKM-2018-032 (RSP11124)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450108
Overlapping SNPs:
65
Concordance:
38

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495216
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
79e7cadad0bf8ff91dfaf47519b9411869ef31b5689aaab2a1a37da45e37bd3b
Stamping Certificate
Download PDF (859.5 KB)
SHASUM Hash
2e1200ab930c3a690d4353cf8088760988fef17aa78b0109d900a5c25f3cac68
QR code for RSP11328

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