Cherry Blossom

RSP 11332

Grower: Yabba Cannaba

General Information

Sample Name
CI4
Accession Date
October 17, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.11%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0524
male female RSP11332

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.076 Unknown- Cherry Wine - 005 (RSP11272)
  2. 0.126 Cherry Blossom (RSP11320)
  3. 0.145 Cherry Blossom (RSP11304)
  4. 0.149 Cherry Blossom (RSP11300)
  5. 0.158 Cherry Blossom (RSP11310)
  6. 0.174 Cherry Blossom (RSP11328)
  7. 0.185 Cherry Blossom (RSP11309)
  8. 0.185 Cherry Blossom (RSP11325)
  9. 0.186 Cherry Blossom (RSP11313)
  10. 0.191 Cherry Blossom (RSP11308)
  11. 0.192 Cherry Blossom (RSP11335)
  12. 0.194 Cherry Blossom (RSP11330)
  13. 0.194 Unknown- Cherry Wine - 003 (RSP11270)
  14. 0.201 Cherry Blossom (RSP11299)
  15. 0.202 Midnight (RSP10941)
  16. 0.203 Cherry Wine (RSP11307)
  17. 0.204 Cherry Wine (RSP11305)
  18. 0.205 Cherry Wine (RSP11145)
  19. 0.208 FL30 (RSP11361)
  20. 0.211 Cherry Blossom (RSP11322)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.255 UP Sunrise (RSP10989)
  2. 0.265 Blueberry Cheesecake (RSP10684)
  3. 0.267 Liberty Haze (RSP11000)
  4. 0.294 Cbot-2019-001 (RSP11129)
  5. 0.295 Durban Poison (RSP11014)
  6. 0.300 Cherry (RSP11142)
  7. 0.308 Cherry (RSP11143)
  8. 0.337 RKM-2018-031 (RSP11123)
  9. 0.341 Recon (RSP10755)
  10. 0.347 Kimbo Slice (RSP10997)
  11. 0.349 QUEEN JESUS (RSP10105)
  12. 0.356 RKM-2018-003 (RSP11094)
  13. 0.359 Blueberry Cheesecake (RSP10672)
  14. 0.360 RKM-2018-020 (RSP11112)
  15. 0.360 Gold Cracker (RSP11048)
  16. 0.363 CST (RSP11002)
  17. 0.367 RKM-2018-027 (RSP11119)
  18. 0.369 RKM-2018-029 (RSP11121)
  19. 0.369 The Gift (RSP10988)
  20. 0.380 Cbot-2019-004 (RSP11132)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.461 JL 4th Gen 2 (RSP11194)
  2. 0.459 JL yellow (RSP11075)
  3. 0.455 Abacus (RSP11266)
  4. 0.450 JL 4th Gen 5 (RSP11199)
  5. 0.448 RKM-2018-002 (RSP11093)
  6. 0.448 JL 3rd Gen Mother (RSP11214)
  7. 0.445 Kush Hemp E1 (RSP11128)
  8. 0.442 Arcata Trainwreck (RSP11176)
  9. 0.442 Feral (RSP11205)
  10. 0.441 Star Dawg (RSP11352)
  11. 0.436 JL 3rd Gen Father (RSP11196)
  12. 0.434 Feral (RSP10890)
  13. 0.431 Chem 91 (RSP11185)
  14. 0.430 Carmaleonte (RSP11207)
  15. 0.430 Garlic (RSP11341)
  16. 0.430 USO 31 (RSP10983)
  17. 0.430 RKM-2018-018 (RSP11110)
  18. 0.430 Feral (RSP10892)
  19. 0.430 USO31 (RSP10233)
  20. 0.428 Danny Noonan (RSP11070)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.469 JL yellow (RSP11075)
  2. 0.455 RKM-2018-002 (RSP11093)
  3. 0.453 Kush Hemp E1 (RSP11128)
  4. 0.446 RKM-2018-018 (RSP11110)
  5. 0.443 Feral (RSP10890)
  6. 0.437 RKM-2018-022 (RSP11114)
  7. 0.435 Skunk 18 (RSP11038)
  8. 0.432 Hermaphrodite Research Sample1 (RSP11049)
  9. 0.432 RKM-2018-026 (RSP11118)
  10. 0.428 Sour Raspberry (RSP10551)
  11. 0.426 RKM-2018-034 (RSP11126)
  12. 0.426 Carmagnola (RSP11037)
  13. 0.424 Ivory (RSP10668)
  14. 0.422 Pie Hoe (RSP11073)
  15. 0.420 Carmagnola (RSP10979)
  16. 0.419 Monoica (RSP10241)
  17. 0.416 Black Beauty (RSP11035)
  18. 0.415 Fedora 17 (RSP10661)
  19. 0.412 USO 31 (RSP10981)
  20. 0.412 Skywalker OG (RSP10837)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448214
Overlapping SNPs:
63
Concordance:
42

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495165
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
609ae69214ba6522447020eff3b65eac5976bd63d00f00bf0501aef85c61aa06
Stamping Certificate
Download PDF (854.7 KB)
SHASUM Hash
b1498826b73874e1c381577887a64d060f9249109f148411629023b42431130f
QR code for RSP11332

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