Cherry Blossom
RSP 11333
Grower: Yabba Cannaba
General Information
- Sample Name
- CG2
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
CBDAS | c.8G>A | p.Cys3Tyr | missense variant | moderate | contig1772 | 2082234 | G/A |
|
CBDAS | c.221C>G | p.Thr74Ser | missense variant | moderate | contig1772 | 2082447 | C/G | |
CBDAS | c.503A>G | p.Asn168Ser | missense variant | moderate | contig1772 | 2082729 | A/G | |
CBDAS | c.1420A>C | p.Lys474Gln | missense variant | moderate | contig1772 | 2083646 | A/C |
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-4a | c.493G>A | p.Gly165Ser | missense variant | moderate | contig700 | 1937904 | G/A |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.172G>T | p.Asp58Tyr | missense variant | moderate | contig83 | 1803197 | C/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.102 Cherry Blossom (RSP11324)
- 0.116 Cherry Blossom (RSP11313)
- 0.178 Cherry Blossom (RSP11314)
- 0.182 Cherry Blossom (RSP11302)
- 0.190 Unknown- Cherry Wine - 005 (RSP11272)
- 0.204 Cherry Blossom (RSP11317)
- 0.213 Cherry Blossom (RSP11331)
- 0.218 Cherry Blossom (RSP11330)
- 0.220 Cherry Blossom (RSP11322)
- 0.226 Cherry Blossom (RSP11299)
- 0.233 Cherry Blossom (RSP11310)
- 0.252 Cherry Blossom (RSP11332)
- 0.253 Cherry Blossom (RSP11334)
- 0.257 Cherry Wine (RSP11267)
- 0.265 Cherry Blossom (RSP11304)
- 0.265 Cherry Blossom (RSP11320)
- 0.265 Cherry Blossom (RSP11335)
- 0.268 Cherry Blossom (RSP11308)
- 0.275 Cherry (RSP11142)
- 0.278 Cherry Blossom (RSP11328)
Nearest genetic relatives (Base Tree)
- 0.284 Cherry (RSP11142)
- 0.335 Recon (RSP10755)
- 0.336 Blueberry Cheesecake (RSP10684)
- 0.350 Liberty Haze (RSP11000)
- 0.365 Cbot-2019-005 (RSP11133)
- 0.366 UP Sunrise (RSP10989)
- 0.378 Tygra (RSP10667)
- 0.381 RKM-2018-019 (RSP11111)
- 0.383 RKM-2018-031 (RSP11123)
- 0.387 Hermaphrodite ResearchSample2 (RSP11050)
- 0.388 Kimbo Slice (RSP10997)
- 0.388 Gold Cracker (RSP11048)
- 0.391 Kyrgyz Gold (RSP11054)
- 0.392 Durban Poison (RSP11014)
- 0.393 RKM-2018-006 (RSP11097)
- 0.394 KYRG-11 (RSP11051)
- 0.396 Tisza (RSP10659)
- 0.400 Carmagnola (RSP10979)
- 0.403 QUEEN JESUS (RSP10105)
- 0.403 The Gift (RSP10988)
Most genetically distant strains (All Samples)
- 0.502 JL yellow (RSP11075)
- 0.501 JL 3rd Gen Mother (RSP11214)
- 0.499 RKM-2018-002 (RSP11093)
- 0.491 JL 3rd Gen Mother (RSP11197)
- 0.485 Chem 91 (RSP11185)
- 0.480 RKM-2018-018 (RSP11110)
- 0.479 Sour Raspberry (RSP10551)
- 0.473 JL 4th Gen 5 (RSP11199)
- 0.472 RKM-2018-024 (RSP11116)
- 0.470 Skunk 18 (RSP11030)
- 0.467 Danny Noonan (RSP11070)
- 0.466 Skunk 18 (RSP11038)
- 0.459 JL 4th Gen 2 (RSP11194)
- 0.458 Sour D (RSP11343)
- 0.458 RKM-2018-023 (RSP11115)
- 0.456 JL 4th Gen 6 (RSP11200)
- 0.455 Cbot-2019-004 (RSP11132)
- 0.454 501st OG (RSP11241)
- 0.454 Blueberry Cheesecake (RSP10680)
- 0.454 JL 4th Gen 1 (RSP11193)
Most genetically distant strains (Base Tree)
- 0.503 RKM-2018-002 (RSP11093)
- 0.499 JL yellow (RSP11075)
- 0.489 RKM-2018-018 (RSP11110)
- 0.478 Sour Raspberry (RSP10551)
- 0.468 Skunk 18 (RSP11038)
- 0.464 Blueberry Cheesecake (RSP10680)
- 0.461 Italian Kiss (RSP11034)
- 0.461 Hermaphrodite Research Sample1 (RSP11049)
- 0.458 RKM-2018-023 (RSP11115)
- 0.452 Cbot-2019-004 (RSP11132)
- 0.451 RKM-2018-033 (RSP11125)
- 0.449 Blueberry Cheesecake (RSP10672)
- 0.447 Black Beauty (RSP11035)
- 0.446 RKM-2018-005 (RSP11096)
- 0.445 RKM-2018-003 (RSP11094)
- 0.444 CST (RSP11002)
- 0.440 RKM-2018-028 (RSP11120)
- 0.438 Feral (RSP10890)
- 0.435 RKM-2018-009 (RSP11100)
- 0.434 RKM-2018-026 (RSP11118)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 42
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
0cbb19383d330fe0
74847c96b4baf29f a99e26b29c1fc859 d36657596f37c882 - Stamping Certificate
- Download PDF (863.0 KB)
- SHASUM Hash
-
02259df9b6c3f62e
bfbd2c2e5ab6388f d6d5565a4d94228c 13b446fb63d7fea4