Cherry Blossom
RSP 11335
Grower: Yabba Cannaba
General Information
- Sample Name
- CK3
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.62C>T | p.Pro21Leu | missense variant | moderate | contig83 | 1803307 | G/A |
|
FAD2-2 |
c.47_57delTG |
p.Leu16fs | frameshift variant | high | contig83 | 1803311 |
GAGTATGATTCA |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.744+1_744+ |
splice donor variant & splice region variant & intron variant | high | contig121 | 2831022 |
GGTAATTTATTT |
|
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.000 Cherry Blossom (RSP11308)
- 0.168 Cherry Blossom (RSP11321)
- 0.176 Unknown- Cherry Wine - 004 (RSP11271)
- 0.184 Cherry Blossom (RSP11334)
- 0.192 Cherry Blossom (RSP11332)
- 0.199 Unknown- Cherry Wine - 005 (RSP11272)
- 0.203 Cherry Blossom (RSP11302)
- 0.205 Cherry Blossom (RSP11316)
- 0.206 Unknown- Cherry Wine - 002 (RSP11269)
- 0.207 Cherry Blossom (RSP11327)
- 0.209 Cherry Blossom (RSP11320)
- 0.211 Cherry Blossom (RSP11311)
- 0.221 Cherry Wine (RSP11267)
- 0.224 Cherry Blossom (RSP11299)
- 0.224 Cherry Blossom (RSP11317)
- 0.229 Cherry Blossom (RSP11326)
- 0.233 Unknown- Cherry Wine - 001 (RSP11268)
- 0.235 Unknown- Cherry Wine - 003 (RSP11270)
- 0.235 Cherry Blossom (RSP11304)
- 0.240 Cherry Blossom (RSP11324)
Nearest genetic relatives (Base Tree)
- 0.303 Blueberry Cheesecake (RSP10684)
- 0.322 Liberty Haze (RSP11000)
- 0.323 UP Sunrise (RSP10989)
- 0.324 RKM-2018-019 (RSP11111)
- 0.328 Cherry (RSP11142)
- 0.344 Cherry (RSP11143)
- 0.344 Durban Poison (RSP11014)
- 0.352 QUEEN JESUS (RSP10105)
- 0.353 Recon (RSP10755)
- 0.355 Blueberry Cheesecake (RSP10672)
- 0.367 RKM-2018-034 (RSP11126)
- 0.370 The Gift (RSP10988)
- 0.374 KYRG-11 (RSP11051)
- 0.382 Hermaphrodite ResearchSample2 (RSP11050)
- 0.383 RKM-2018-022 (RSP11114)
- 0.385 Tisza (RSP10659)
- 0.385 Tygra (RSP10667)
- 0.386 Golden Goat 2 (RSP10991)
- 0.386 RKM-2018-003 (RSP11094)
- 0.388 Kimbo Slice (RSP10997)
Most genetically distant strains (All Samples)
- 0.519 JL yellow (RSP11075)
- 0.496 JL 3rd Gen Mother (RSP11214)
- 0.487 JL 4th Gen 5 (RSP11199)
- 0.486 JL 3rd Gen Mother (RSP11197)
- 0.485 JL 4th Gen 2 (RSP11194)
- 0.468 80E (RSP11213)
- 0.467 JL 4th Gen 6 (RSP11200)
- 0.466 RKM-2018-002 (RSP11093)
- 0.465 JL 4th Gen 1 (RSP11193)
- 0.463 Chem 91 (RSP11185)
- 0.459 JL 4th Gen 4 (RSP11198)
- 0.458 Skunk 18 (RSP11038)
- 0.458 RKM-2018-009 (RSP11100)
- 0.458 RKM-2018-024 (RSP11116)
- 0.456 Sour Raspberry (RSP10551)
- 0.451 Jacks Cleaner (RSP11347)
- 0.451 RKM-2018-010 (RSP11101)
- 0.447 501st OG (RSP11241)
- 0.445 Abacus (RSP11266)
- 0.445 80E (RSP11211)
Most genetically distant strains (Base Tree)
- 0.526 JL yellow (RSP11075)
- 0.467 RKM-2018-002 (RSP11093)
- 0.466 Skunk 18 (RSP11038)
- 0.460 RKM-2018-009 (RSP11100)
- 0.459 Sour Raspberry (RSP10551)
- 0.450 Italian Kiss (RSP11034)
- 0.448 RKM-2018-006 (RSP11097)
- 0.442 RKM-2018-033 (RSP11125)
- 0.439 Carmagnola (RSP10979)
- 0.435 RKM-2018-018 (RSP11110)
- 0.435 RKM-2018-023 (RSP11115)
- 0.434 Blue Dream (RSP11033)
- 0.433 Hermaphrodite Research Sample1 (RSP11049)
- 0.431 Black Beauty (RSP11035)
- 0.431 Kush Hemp E1 (RSP11128)
- 0.431 Feral (RSP10890)
- 0.428 RKM-2018-031 (RSP11123)
- 0.426 Jiangji (RSP10653)
- 0.426 RKM-2018-032 (RSP11124)
- 0.425 Carmagnola (RSP11037)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 65
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
587e67d202e5fdc1
4ef75c489299ee36 2a122eaa93cab8f1 248b41364da9bf55 - Stamping Certificate
- Download PDF (856.1 KB)
- SHASUM Hash
-
1d47e686ae280503
586fd32257f2be20 55120b09eef6438d 450dc1aa44e89ebb