White Label 1
RSP 11336
General Information
- Sample Name
- THCCO 1
- Accession Date
- October 17, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.169 Headcheese (RSP11192)
- 0.171 RKM-2018-025 (RSP11117)
- 0.172 BLACK JACK (RSP11346)
- 0.172 RKM-2018-016 (RSP11108)
- 0.184 Black Jack (RSP10603)
- 0.192 RKM-2018-027 (RSP11119)
- 0.225 Saint Jack (RSP11179)
- 0.226 Gold Cracker (RSP11048)
- 0.229 Gold Cracker (RSP11041)
- 0.235 Durban Poison 1 (RSP10996)
- 0.238 Durban Poison (RSP10998)
- 0.244 Tangerine Haze (RSP10995)
- 0.246 Durban Poison 1 (RSP11013)
- 0.248 Durban Poison (RSP11014)
- 0.253 CST (RSP11002)
- 0.253 Power Plant (RSP11223)
- 0.255 Cheese (RSP10460)
- 0.257 Durban Poison (RSP11226)
- 0.257 Hermaphrodite ResearchSample2 (RSP11050)
- 0.260 RKM-2018-007 (RSP11098)
Nearest genetic relatives (Base Tree)
- 0.187 RKM-2018-027 (RSP11119)
- 0.224 Gold Cracker (RSP11048)
- 0.247 Durban Poison (RSP11014)
- 0.251 CST (RSP11002)
- 0.268 Hermaphrodite ResearchSample2 (RSP11050)
- 0.275 UP Sunrise (RSP10989)
- 0.277 RKM-2018-031 (RSP11123)
- 0.279 Italian Kiss (RSP11034)
- 0.279 RKM-2018-023 (RSP11115)
- 0.282 RKM-2018-009 (RSP11100)
- 0.289 RKM-2018-003 (RSP11094)
- 0.291 RKM-2018-020 (RSP11112)
- 0.292 RKM-2018-022 (RSP11114)
- 0.304 Blue Dream (RSP11033)
- 0.304 Liberty Haze (RSP11000)
- 0.308 Recon (RSP10755)
- 0.309 RKM-2018-006 (RSP11097)
- 0.310 Hermaphrodite Research Sample1 (RSP11049)
- 0.311 RKM-2018-026 (RSP11118)
- 0.312 Blueberry Cheesecake (RSP10680)
Most genetically distant strains (All Samples)
- 0.545 Cherry Blossom (RSP11323)
- 0.508 Cherry Blossom (RSP11274)
- 0.491 Cherry Blossom (RSP11327)
- 0.482 Cherry Blossom (RSP11312)
- 0.482 Cherry Blossom (RSP11318)
- 0.466 Cherry Blossom (RSP11328)
- 0.462 Cherry Blossom (RSP11331)
- 0.462 Cherry Blossom (RSP11314)
- 0.462 Cherry Blossom CBG (RSP11303)
- 0.459 Cherry Blossom (RSP11316)
- 0.458 Cherry Blossom (RSP11309)
- 0.457 Cherry Blossom (RSP11306)
- 0.456 Cherry Blossom (RSP11315)
- 0.453 Cherry Blossom (RSP11299)
- 0.452 Cherry Blossom (RSP11302)
- 0.448 Cherry Blossom (RSP11333)
- 0.446 Cherry Blossom (RSP11329)
- 0.445 Cherry Blossom (RSP11298)
- 0.445 Cherry Blossom (RSP11313)
- 0.442 Cherry Blossom (RSP11330)
Most genetically distant strains (Base Tree)
- 0.413 Cbot-2019-005 (RSP11133)
- 0.379 Cherry (RSP11143)
- 0.379 Cbot-2019-001 (RSP11129)
- 0.373 JL yellow (RSP11075)
- 0.363 Kush Hemp E1 (RSP11128)
- 0.363 Feral (RSP10890)
- 0.363 Monoica (RSP10241)
- 0.358 Carmagnola (RSP11037)
- 0.357 Santhica27 (RSP11047)
- 0.357 QUEEN JESUS (RSP10105)
- 0.354 Carmagnola (RSP10979)
- 0.354 RKM-2018-034 (RSP11126)
- 0.352 KYRG-11 (RSP11051)
- 0.350 Jiangji (RSP10653)
- 0.350 Futura 75 (RSP10664)
- 0.348 RKM-2018-033 (RSP11125)
- 0.346 Sour Raspberry (RSP10551)
- 0.345 RKM-2018-005 (RSP11096)
- 0.345 Tisza (RSP11044)
- 0.344 Lovrin (RSP10658)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 66
- Concordance:
- 64
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5
Blockchain Registration Information
- Transaction ID
-
e31e1f2be73d735f
d084c979e423d45b 61ebb93a9c8688f4 1a837da2aa54d42e - Stamping Certificate
- Download PDF (858.1 KB)
- SHASUM Hash
-
d5ed692af64425f7
dd5867aaf192a791 e6d077e55e62014a 722b7e288b79709d