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RSP 11336

Grower: The Hells Canyon Hydroponics Company

General Information

Sample Name
THCCO 1
Accession Date
October 17, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.95%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0408
male female RSP11336

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)
THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.169 Headcheese (RSP11192)
  2. 0.171 RKM-2018-025 (RSP11117)
  3. 0.172 BLACK JACK (RSP11346)
  4. 0.172 RKM-2018-016 (RSP11108)
  5. 0.184 Black Jack (RSP10603)
  6. 0.192 RKM-2018-027 (RSP11119)
  7. 0.225 Saint Jack (RSP11179)
  8. 0.226 Gold Cracker (RSP11048)
  9. 0.229 Gold Cracker (RSP11041)
  10. 0.235 Durban Poison 1 (RSP10996)
  11. 0.238 Durban Poison (RSP10998)
  12. 0.244 Tangerine Haze (RSP10995)
  13. 0.246 Durban Poison 1 (RSP11013)
  14. 0.248 Durban Poison (RSP11014)
  15. 0.253 CST (RSP11002)
  16. 0.253 Power Plant (RSP11223)
  17. 0.255 Cheese (RSP10460)
  18. 0.257 Durban Poison (RSP11226)
  19. 0.257 Hermaphrodite ResearchSample2 (RSP11050)
  20. 0.260 RKM-2018-007 (RSP11098)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.187 RKM-2018-027 (RSP11119)
  2. 0.224 Gold Cracker (RSP11048)
  3. 0.247 Durban Poison (RSP11014)
  4. 0.251 CST (RSP11002)
  5. 0.268 Hermaphrodite ResearchSample2 (RSP11050)
  6. 0.275 UP Sunrise (RSP10989)
  7. 0.277 RKM-2018-031 (RSP11123)
  8. 0.279 Italian Kiss (RSP11034)
  9. 0.279 RKM-2018-023 (RSP11115)
  10. 0.282 RKM-2018-009 (RSP11100)
  11. 0.289 RKM-2018-003 (RSP11094)
  12. 0.291 RKM-2018-020 (RSP11112)
  13. 0.292 RKM-2018-022 (RSP11114)
  14. 0.304 Blue Dream (RSP11033)
  15. 0.304 Liberty Haze (RSP11000)
  16. 0.308 Recon (RSP10755)
  17. 0.309 RKM-2018-006 (RSP11097)
  18. 0.310 Hermaphrodite Research Sample1 (RSP11049)
  19. 0.311 RKM-2018-026 (RSP11118)
  20. 0.312 Blueberry Cheesecake (RSP10680)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
clone distance sibling distance more distant
  1. 0.545 Cherry Blossom (RSP11323)
  2. 0.508 Cherry Blossom (RSP11274)
  3. 0.491 Cherry Blossom (RSP11327)
  4. 0.482 Cherry Blossom (RSP11312)
  5. 0.482 Cherry Blossom (RSP11318)
  6. 0.466 Cherry Blossom (RSP11328)
  7. 0.462 Cherry Blossom (RSP11331)
  8. 0.462 Cherry Blossom (RSP11314)
  9. 0.462 Cherry Blossom CBG (RSP11303)
  10. 0.459 Cherry Blossom (RSP11316)
  11. 0.458 Cherry Blossom (RSP11309)
  12. 0.457 Cherry Blossom (RSP11306)
  13. 0.456 Cherry Blossom (RSP11315)
  14. 0.453 Cherry Blossom (RSP11299)
  15. 0.452 Cherry Blossom (RSP11302)
  16. 0.448 Cherry Blossom (RSP11333)
  17. 0.446 Cherry Blossom (RSP11329)
  18. 0.445 Cherry Blossom (RSP11298)
  19. 0.445 Cherry Blossom (RSP11313)
  20. 0.442 Cherry Blossom (RSP11330)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.413 Cbot-2019-005 (RSP11133)
  2. 0.379 Cherry (RSP11143)
  3. 0.379 Cbot-2019-001 (RSP11129)
  4. 0.373 JL yellow (RSP11075)
  5. 0.363 Kush Hemp E1 (RSP11128)
  6. 0.363 Feral (RSP10890)
  7. 0.363 Monoica (RSP10241)
  8. 0.358 Carmagnola (RSP11037)
  9. 0.357 Santhica27 (RSP11047)
  10. 0.357 QUEEN JESUS (RSP10105)
  11. 0.354 Carmagnola (RSP10979)
  12. 0.354 RKM-2018-034 (RSP11126)
  13. 0.352 KYRG-11 (RSP11051)
  14. 0.350 Jiangji (RSP10653)
  15. 0.350 Futura 75 (RSP10664)
  16. 0.348 RKM-2018-033 (RSP11125)
  17. 0.346 Sour Raspberry (RSP10551)
  18. 0.345 RKM-2018-005 (RSP11096)
  19. 0.345 Tisza (RSP11044)
  20. 0.344 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349288
Overlapping SNPs:
66
Concordance:
64

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495274
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
e31e1f2be73d735fd084c979e423d45b61ebb93a9c8688f41a837da2aa54d42e
Stamping Certificate
Download PDF (858.1 KB)
SHASUM Hash
d5ed692af64425f7dd5867aaf192a791e6d077e55e62014a722b7e288b79709d
QR code for RSP11336

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