White Label 3

RSP 11338

Grower: The Hells Canyon Hydroponics Company

General Information

Sample Name
THCCO 3
Accession Date
October 17, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.16%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0426
male female RSP11338

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1392T>A p.Ser464Arg missense variant moderate contig380 285177

IGV: Start, Jump

A/T
NGS:
0.007
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.229 Herijuana (RSP11181)
  2. 0.237 Durban Poison #1 (RSP11013)
  3. 0.239 RKM-2018-019 (RSP11111)
  4. 0.242 Rest (RSP11377)
  5. 0.242 Electra (RSP11366)
  6. 0.245 Domnesia (RSP11184)
  7. 0.246 Trump x Trump (RSP11466)
  8. 0.252 Doug s Varin (RSP11243)
  9. 0.253 Cherry Gar-See-Ya (RSP11642)
  10. 0.254 Erez 05MAY2017 (RSP10942)
  11. 0.254 Afm (RSP12622)
  12. 0.255 Durban Poison #1 (RSP10996)
  13. 0.256 Lift (RSP11378)
  14. 0.258 Lifter (RSP11365)
  15. 0.258 New BSR (RSP12104)
  16. 0.258 MENDO BREATH (RSP11242)
  17. 0.259 Eagle Scout T-111 (RSP11625)
  18. 0.259 Alaska USA (RSP11171)
  19. 0.261 Miss X (RSP10999)
  20. 0.263 Saint Jack (RSP11179)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.243 RKM-2018-019 (RSP11111)
  2. 0.249 Blueberry Cheesecake (RSP10684)
  3. 0.270 Durban Poison (RSP11014)
  4. 0.275 Queen Jesus (RSP10105)
  5. 0.281 Liberty Haze (RSP11000)
  6. 0.285 RKM-2018-022 (RSP11114)
  7. 0.289 RKM-2018-033 (RSP11125)
  8. 0.289 Recon (RSP10755)
  9. 0.289 RKM-2018-020 (RSP11112)
  10. 0.289 UP Sunrise (RSP10989)
  11. 0.290 RKM-2018-003 (RSP11094)
  12. 0.290 Pie Hoe (RSP11073)
  13. 0.291 RKM-2018-031 (RSP11123)
  14. 0.291 Kush Hemp E1 (RSP11128)
  15. 0.292 Cbot-2019-006 (RSP11134)
  16. 0.297 RKM-2018-028 (RSP11120)
  17. 0.299 Tygra (RSP10667)
  18. 0.299 The Gift (RSP10988)
  19. 0.300 RKM-2018-004 (RSP11096)
  20. 0.302 Golden Goat 2 (RSP10991)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.443 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.443 Cherry Blossom (RSP11323)
  3. 0.442 Cherry Blossom (RSP11318)
  4. 0.435 Cherry Blossom (RSP11301)
  5. 0.431 Cherry Blossom (RSP11328)
  6. 0.420 Cherry Blossom (RSP11309)
  7. 0.418 Tanao Sri -46- (RSP11486)
  8. 0.415 Cherry Blossom (RSP11306)
  9. 0.415 Cherry Blossom (RSP11322)
  10. 0.414 Unknown--Cherry Wine---003- (RSP11270)
  11. 0.412 Unknown--Cherry Wine---002- (RSP11269)
  12. 0.411 Cherry Blossom (RSP11298)
  13. 0.404 JL 4th Gen 5 (RSP11199)
  14. 0.403 Ringo s Gift -Katie s Cut- (RSP11624)
  15. 0.403 JL yellow (RSP11075)
  16. 0.403 Cherry Blossom (RSP11325)
  17. 0.402 AVIDEKEL 2 0 (RSP11174)
  18. 0.400 Cherry Blossom (RSP11334)
  19. 0.400 80E (RSP11213)
  20. 0.400 Cherry Blossom (RSP11274)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.396 JL yellow (RSP11075)
  2. 0.373 Monoica (RSP10241)
  3. 0.362 Feral (RSP10890)
  4. 0.355 Carmagnola (RSP11037)
  5. 0.354 Italian Kiss (RSP11034)
  6. 0.353 Santhica27 (RSP11047)
  7. 0.352 Ivory (RSP10668)
  8. 0.352 Cbot-2019-005 (RSP11133)
  9. 0.351 Cbot-2019-001 (RSP11129)
  10. 0.349 Lovrin (RSP10658)
  11. 0.349 Blue Dream (RSP11033)
  12. 0.348 Cherry (RSP11143)
  13. 0.345 Cbot-2019-004 (RSP11132)
  14. 0.343 RKM-2018-009 (RSP11100)
  15. 0.338 Kyrgyz Gold (RSP11054)
  16. 0.337 USO 31 (RSP10981)
  17. 0.337 Cherry (RSP11142)
  18. 0.333 RKM-2018-027 (RSP11119)
  19. 0.333 Futura 75 (RSP10664)
  20. 0.332 RKM-2018-006 (RSP11097)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346738
Overlapping SNPs:
65
Concordance:
38

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495207
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
6847f5e79c59df89e7674211ba7448d7b034362db5959e963f3e1d00586279cb
Stamping Certificate
Download PDF (857.8 KB)
SHASUM Hash
ed3549e9a9eeb3223896ea8f69fd584d5afe52ae37fa18847283e45251b37bca
QR code for RSP11338

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