JABBA'S STASH

RSP 11348

Grower: Happy Valley

Summary

JABBA'S STASH (RSP11348/Happy Valley) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is The Gift (RSP10988/Manoa Botanicals) and it is a potential sibling. The heterozygosity rate is 1.19% which is higher than average (67.3 percentile).

General Information

Accession Date
October 22, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.19%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0469
male female RSP11348

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.188T>A p.Ile63Asn missense variant moderate contig700 1945202

IGV: Start, Jump

A/T
NGS:
0.061
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.194 The Gift (RSP10988)
  2. 0.195 RKM-2018-008 (RSP11099)
  3. 0.199 Square Wave (RSP11344)
  4. 0.201 Pure Power Plant (RSP11265)
  5. 0.202 MENDO BREATH (RSP11242)
  6. 0.207 RKM-2018-034 (RSP11126)
  7. 0.217 Golden Road (RSP11345)
  8. 0.221 Gorilla Cookies (RSP11231)
  9. 0.223 Sunday Driver (RSP11071)
  10. 0.225 Blueberry Cheesecake (RSP10684)
  11. 0.235 NSPM1 (RSP11362)
  12. 0.236 North Traveler (RSP11163)
  13. 0.236 Kimbo Slice (RSP10997)
  14. 0.237 Super Blue Dream (RSP11011)
  15. 0.239 Hermaphrodite ResearchSample2 (RSP11050)
  16. 0.239 Rugburn OG (RSP11353)
  17. 0.241 Harlox (RSP11178)
  18. 0.241 SFVxTK (RSP11072)
  19. 0.243 Skywalker OG (RSP10837)
  20. 0.244 Pie Hoe (RSP11073)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.194 The Gift (RSP10988)
  2. 0.213 RKM-2018-034 (RSP11126)
  3. 0.230 Kimbo Slice (RSP10997)
  4. 0.231 Blueberry Cheesecake (RSP10684)
  5. 0.238 Hermaphrodite ResearchSample2 (RSP11050)
  6. 0.245 Skywalker OG (RSP10837)
  7. 0.251 RKM-2018-005 (RSP11096)
  8. 0.254 RKM-2018-032 (RSP11124)
  9. 0.255 Pie Hoe (RSP11073)
  10. 0.258 RKM-2018-033 (RSP11125)
  11. 0.260 RKM-2018-026 (RSP11118)
  12. 0.262 RKM-2018-019 (RSP11111)
  13. 0.266 Golden Goat 2 (RSP10991)
  14. 0.269 QUEEN JESUS (RSP10105)
  15. 0.271 Skunk 18 (RSP11038)
  16. 0.275 Kush Hemp E1 (RSP11128)
  17. 0.282 RKM-2018-022 (RSP11114)
  18. 0.284 Blue Dream (RSP11033)
  19. 0.285 RKM-2018-029 (RSP11121)
  20. 0.287 Sour Raspberry (RSP10551)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.475 Cherry Blossom (RSP11306)
  2. 0.470 Cherry Blossom (RSP11328)
  3. 0.462 Wife (RSP11148)
  4. 0.457 Cherry Blossom (RSP11325)
  5. 0.450 Cherry Blossom (RSP11322)
  6. 0.450 Cherry Blossom (RSP11318)
  7. 0.448 Cherry Blossom (RSP11330)
  8. 0.447 Cherry Blossom (RSP11301)
  9. 0.445 Cherry Blossom (RSP11309)
  10. 0.435 Cherry Blossom (RSP11300)
  11. 0.433 Cherry Blossom (RSP11317)
  12. 0.431 Cherry Blossom (RSP11323)
  13. 0.426 Cherry Blossom (RSP11298)
  14. 0.420 AVIDEKEL 2 0 (RSP11174)
  15. 0.417 Cherry Blossom (RSP11312)
  16. 0.416 AVIDEKEL USA (RSP11169)
  17. 0.411 Cherry Blossom (RSP11332)
  18. 0.407 Unknown- Cherry Wine - 003 (RSP11270)
  19. 0.405 Unknown- Cherry Wine - 001 (RSP11268)
  20. 0.405 Cbot-2019-001 (RSP11129)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.406 Cbot-2019-001 (RSP11129)
  2. 0.384 Cherry (RSP11143)
  3. 0.379 Cherry (RSP11142)
  4. 0.367 JL yellow (RSP11075)
  5. 0.355 UP Sunrise (RSP10989)
  6. 0.353 RKM-2018-006 (RSP11097)
  7. 0.349 Italian Kiss (RSP11034)
  8. 0.349 RKM-2018-031 (RSP11123)
  9. 0.347 Monoica (RSP10241)
  10. 0.345 Carmagnola (RSP11037)
  11. 0.341 Ivory (RSP10668)
  12. 0.337 Carmagnola (RSP10979)
  13. 0.335 RKM-2018-027 (RSP11119)
  14. 0.335 Cbot-2019-005 (RSP11133)
  15. 0.335 Santhica27 (RSP11047)
  16. 0.333 Feral (RSP10890)
  17. 0.329 RKM-2018-018 (RSP11110)
  18. 0.327 RKM-2018-023 (RSP11115)
  19. 0.326 Lovrin (RSP10658)
  20. 0.325 Blueberry Cheesecake (RSP10672)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349262
Overlapping SNPs:
62
Concordance:
42

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495266
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
2346207128a4788b64293eb994d952e204e92b5c566e3b2900eade7cfec22c89
Stamping Certificate
Download PDF (861.4 KB)
SHASUM Hash
19183747fd625cc650cf8536c6e95ee85aeb638f0f3763dd53b730df227a668a
QR code for RSP11348

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