CANNATONIC

RSP 11349

Grower: Happy Valley

Summary

CANNATONIC (RSP11349/Happy Valley) is a genetic Type I plant and its genetics appear rare. The sample's closest relative in the database is Queen Dream CBG (RSP11283/Yabba Cannaba) and it is a potential sibling. The heterozygosity rate is 1.04% which is average (40.4 percentile).

General Information

Accession Date
October 22, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.04%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0454
male female RSP11349

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.189 Queen Dream CBG (RSP11283)
  2. 0.197 101st AIRBORN CBD (RSP11350)
  3. 0.202 AVIDEKEL 2 0 (RSP11174)
  4. 0.203 Cbot-2019-003 (RSP11131)
  5. 0.208 Queen Dream CBG (RSP11279)
  6. 0.209 Hot Blonde (RSP11292)
  7. 0.212 Cbot-2019-001 (RSP11129)
  8. 0.215 Liberty Haze (RSP11000)
  9. 0.218 Liberty Haze (RSP10946)
  10. 0.226 Domnesia (RSP11184)
  11. 0.230 Doug s Varin (RSP11243)
  12. 0.234 Queen Dream CBG (RSP11296)
  13. 0.235 Queen Dream CBG (RSP11297)
  14. 0.236 Queen Dream CBG (RSP11295)
  15. 0.236 FL30 (RSP11361)
  16. 0.236 Blueberry Cheesecake (RSP10684)
  17. 0.237 Queen Dream CBG (RSP11276)
  18. 0.242 Cbot-2019-005 (RSP11133)
  19. 0.242 Avidekel (RSP10938)
  20. 0.242 Queen Dream CBG (RSP11275)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.218 Cbot-2019-001 (RSP11129)
  2. 0.226 Liberty Haze (RSP11000)
  3. 0.234 Blueberry Cheesecake (RSP10684)
  4. 0.251 Cbot-2019-005 (RSP11133)
  5. 0.270 Blueberry Cheesecake (RSP10672)
  6. 0.278 Durban Poison (RSP11014)
  7. 0.283 RKM-2018-020 (RSP11112)
  8. 0.289 UP Sunrise (RSP10989)
  9. 0.292 Golden Goat 2 (RSP10991)
  10. 0.292 Cbot-2019-004 (RSP11132)
  11. 0.296 Blueberry Cheesecake (RSP10680)
  12. 0.298 Kush Hemp E1 (RSP11128)
  13. 0.300 Cherry (RSP11142)
  14. 0.301 Cbot-2019-006 (RSP11134)
  15. 0.303 QUEEN JESUS (RSP10105)
  16. 0.304 RKM-2018-031 (RSP11123)
  17. 0.310 Gold Cracker (RSP11048)
  18. 0.310 RKM-2018-027 (RSP11119)
  19. 0.311 Recon (RSP10755)
  20. 0.311 RKM-2018-033 (RSP11125)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.456 Cherry Blossom (RSP11323)
  2. 0.432 80E (RSP11213)
  3. 0.426 80E (RSP11212)
  4. 0.415 80E (RSP11211)
  5. 0.412 Cherry Blossom (RSP11306)
  6. 0.406 Cherry Blossom (RSP11317)
  7. 0.403 JL yellow (RSP11075)
  8. 0.403 Cherry Blossom CBG (RSP11303)
  9. 0.400 MENDO BREATH (RSP11242)
  10. 0.397 OR (RSP10940)
  11. 0.397 Carmagnola (RSP11202)
  12. 0.396 Unknown- Cherry Wine - 004 (RSP11271)
  13. 0.395 Carmagnola (RSP10977)
  14. 0.394 Feral (RSP10890)
  15. 0.392 Carmagnola (RSP11037)
  16. 0.391 Carmagnola (RSP10980)
  17. 0.391 Monoica (RSP10241)
  18. 0.390 JL 3rd Gen Mother (RSP11214)
  19. 0.389 Carmagnola (RSP10979)
  20. 0.389 RKM-2018-034 (RSP11126)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.403 Carmagnola (RSP11037)
  2. 0.395 JL yellow (RSP11075)
  3. 0.395 Feral (RSP10890)
  4. 0.389 Monoica (RSP10241)
  5. 0.387 Carmagnola (RSP10979)
  6. 0.383 RKM-2018-034 (RSP11126)
  7. 0.375 Santhica27 (RSP11047)
  8. 0.371 Tisza (RSP11044)
  9. 0.370 Ivory (RSP10668)
  10. 0.367 RKM-2018-002 (RSP11093)
  11. 0.363 RKM-2018-018 (RSP11110)
  12. 0.362 Italian Kiss (RSP11034)
  13. 0.357 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.357 Futura 75 (RSP10664)
  15. 0.355 Jiangji (RSP10653)
  16. 0.355 RKM-2018-022 (RSP11114)
  17. 0.352 Tisza (RSP10659)
  18. 0.351 Fedora 17 (RSP10661)
  19. 0.351 Skywalker OG (RSP10837)
  20. 0.351 Black Beauty (RSP11035)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346935
Overlapping SNPs:
66
Concordance:
43

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495252
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
163c00f12f291528b420ec875afe853a8f846f6caddb1bf13e92110b74f1320c
Stamping Certificate
Download PDF (845.8 KB)
SHASUM Hash
452cde813a8c64d75a3d46159008a73c15511506a72d152dab977700e8d3f070
QR code for RSP11349

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