Star Dawg

RSP 11352

Grower: Happy Valley

Summary

Star Dawg (RSP11352/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is RKM-2018-002 (RSP11093/R-Kiem Seeds) and it is a potential sibling. The heterozygosity rate is 1.14% which is average (58.8 percentile).

General Information

Accession Date
October 22, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.14%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0498
male female RSP11352

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.145 RKM-2018-002 (RSP11093)
  2. 0.150 Sour D (RSP11343)
  3. 0.152 Super Sour Diesel (RSP11191)
  4. 0.163 New York City Deisel (RSP11225)
  5. 0.164 East Coast Sour Diesel (RSP10243)
  6. 0.172 Dominion Skunk (RSP11354)
  7. 0.175 Rugburn OG (RSP11353)
  8. 0.184 RKM-2018-012 (RSP11103)
  9. 0.189 Abacus (RSP11266)
  10. 0.189 Chem 91 (RSP11185)
  11. 0.190 NSPM1 (RSP11362)
  12. 0.191 Pure Power Plant (RSP11265)
  13. 0.192 Gorilla Cookies (RSP11231)
  14. 0.193 Garlic (RSP11341)
  15. 0.193 RKM-2018-013 (RSP11104)
  16. 0.196 501st OG (RSP11241)
  17. 0.197 Power Plant (RSP11223)
  18. 0.200 RKM-2018-032 (RSP11124)
  19. 0.201 RKM-2018-017 (RSP11109)
  20. 0.203 RKM-2018-021 (RSP11113)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.145 RKM-2018-002 (RSP11093)
  2. 0.197 RKM-2018-032 (RSP11124)
  3. 0.205 Skywalker OG (RSP10837)
  4. 0.209 Blueberry Cheesecake (RSP10684)
  5. 0.219 RKM-2018-026 (RSP11118)
  6. 0.220 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.223 Hermaphrodite ResearchSample2 (RSP11050)
  8. 0.227 RKM-2018-005 (RSP11096)
  9. 0.229 RKM-2018-034 (RSP11126)
  10. 0.241 Pie Hoe (RSP11073)
  11. 0.243 Gold Cracker (RSP11048)
  12. 0.249 RKM-2018-009 (RSP11100)
  13. 0.252 RKM-2018-033 (RSP11125)
  14. 0.257 Durban Poison (RSP11014)
  15. 0.269 RKM-2018-022 (RSP11114)
  16. 0.274 RKM-2018-020 (RSP11112)
  17. 0.274 The Gift (RSP10988)
  18. 0.277 Golden Goat 2 (RSP10991)
  19. 0.278 RKM-2018-018 (RSP11110)
  20. 0.279 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.505 Cherry Blossom (RSP11325)
  2. 0.497 Cherry Blossom (RSP11318)
  3. 0.494 Unknown- Cherry Wine - 001 (RSP11268)
  4. 0.493 Cherry Blossom (RSP11306)
  5. 0.482 Cherry Blossom (RSP11323)
  6. 0.478 Cherry Blossom (RSP11328)
  7. 0.476 Cherry Blossom (RSP11301)
  8. 0.469 Wife (RSP11148)
  9. 0.468 Cherry Blossom (RSP11315)
  10. 0.467 Cherry Blossom (RSP11314)
  11. 0.465 Cherry Blossom (RSP11322)
  12. 0.463 Avidekel (RSP10938)
  13. 0.462 Cherry Blossom (RSP11274)
  14. 0.456 Cherry Blossom (RSP11327)
  15. 0.456 Cherry Blossom (RSP11311)
  16. 0.447 AVIDEKEL 2 0 (RSP11174)
  17. 0.445 Unknown- Cherry Wine - 005 (RSP11272)
  18. 0.442 Cherry Blossom CBG (RSP11303)
  19. 0.442 Cherry Blossom (RSP11300)
  20. 0.441 Cherry Blossom (RSP11332)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.421 Cbot-2019-001 (RSP11129)
  2. 0.413 Cbot-2019-005 (RSP11133)
  3. 0.394 JL yellow (RSP11075)
  4. 0.393 Cherry (RSP11143)
  5. 0.385 Cherry (RSP11142)
  6. 0.379 Ivory (RSP10668)
  7. 0.367 Futura 75 (RSP10664)
  8. 0.362 Lovrin (RSP10658)
  9. 0.357 Feral (RSP10890)
  10. 0.348 Carmagnola (RSP11037)
  11. 0.348 Cbot-2019-004 (RSP11132)
  12. 0.347 Jiangji (RSP10653)
  13. 0.346 Santhica27 (RSP11047)
  14. 0.345 Fedora 17 (RSP10661)
  15. 0.345 Black Beauty (RSP11035)
  16. 0.345 RKM-2018-006 (RSP11097)
  17. 0.344 Kyrgyz Gold (RSP11054)
  18. 0.344 Carmagnola (RSP10979)
  19. 0.343 Monoica (RSP10241)
  20. 0.340 USO 31 (RSP10981)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349242
Overlapping SNPs:
65
Concordance:
47

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495164
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
e3d7ea35309159b13177ea0c7c6165fe02b3456962978bb64a4a953a4beabe03
Stamping Certificate
Download PDF (858.6 KB)
SHASUM Hash
28db5ffc7511aedb14a99a9df3c0b915bdf14bd795e254fce179a8f88d4e063c
QR code for RSP11352

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