Strawberry Cough

RSP 11356

Grower: Happy Valley

Summary

Strawberry Cough (RSP11356/Happy Valley) is a genetic Type I plant and its genetics appear uncommon. The sample's closest relative in the database is Dominion Skunk (RSP11354/Happy Valley) and it is a potential sibling. The heterozygosity rate is 1.2% which is higher than average (68.5 percentile).

General Information

Accession Date
October 22, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.2%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0510
male female RSP11356

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.008 Strawberry (RSP12095)
  2. 0.010 Green Crack (RSP12099)
  3. 0.191 Dominion Skunk (RSP11354)
  4. 0.197 Serious Happiness (RSP10763)
  5. 0.199 Domnesia (RSP11184)
  6. 0.201 Square Wave (RSP11344)
  7. 0.203 Golden Goat 2 (RSP10991)
  8. 0.206 White Label 2 (RSP11337)
  9. 0.207 Blue Dream (RSP11017)
  10. 0.208 NSPM x NSPM (RSP11487)
  11. 0.209 Miss X (RSP10999)
  12. 0.210 Super Blue Dream (RSP11011)
  13. 0.211 Durban Poison #1 (RSP11013)
  14. 0.212 Doug s Varin (RSP11243)
  15. 0.212 Gold Cracker (RSP11041)
  16. 0.214 Blue Dream (RSP11004)
  17. 0.214 Blue Dream (RSP11006)
  18. 0.218 Eran Almog 05MAY2017 (RSP10937)
  19. 0.218 Electra (RSP11366)
  20. 0.218 Blueberry Cheesecake (RSP10684)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.200 Golden Goat 2 (RSP10991)
  2. 0.224 Gold Cracker (RSP11048)
  3. 0.227 Blueberry Cheesecake (RSP10684)
  4. 0.234 Recon (RSP10755)
  5. 0.242 Durban Poison (RSP11014)
  6. 0.244 Blue Dream (RSP11033)
  7. 0.250 RKM-2018-034 (RSP11126)
  8. 0.252 RKM-2018-019 (RSP11111)
  9. 0.253 RKM-2018-022 (RSP11114)
  10. 0.255 RKM-2018-020 (RSP11112)
  11. 0.260 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.261 RKM-2018-027 (RSP11119)
  13. 0.265 Liberty Haze (RSP11000)
  14. 0.269 RKM-2018-003 (RSP11094)
  15. 0.274 Pie Hoe (RSP11073)
  16. 0.276 Cbot-2019-006 (RSP11134)
  17. 0.276 UP Sunrise (RSP10989)
  18. 0.277 RKM-2018-023 (RSP11115)
  19. 0.278 Skywalker OG (RSP10837)
  20. 0.278 CST (RSP11002)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.490 Cherry Blossom (RSP11323)
  2. 0.461 Cherry Blossom (RSP11318)
  3. 0.450 Cherry Blossom (RSP11328)
  4. 0.426 Tanao Sri -46- (RSP11486)
  5. 0.424 Cherry Blossom (RSP11301)
  6. 0.418 Cherry Blossom (RSP11306)
  7. 0.417 Cherry Blossom (RSP11325)
  8. 0.417 Cherry Blossom (RSP11309)
  9. 0.415 Unknown--Cherry Wine---001- (RSP11268)
  10. 0.404 Cherry Blossom (RSP11298)
  11. 0.403 Cherry Blossom (RSP11312)
  12. 0.400 Unknown--Cherry Wine---003- (RSP11270)
  13. 0.398 Cherry Blossom (RSP11274)
  14. 0.395 JL x NSPM1 4 (RSP11482)
  15. 0.393 Brunswick High (RSP11164)
  16. 0.393 Cherry Blossom (RSP11327)
  17. 0.393 JL yellow (RSP11075)
  18. 0.392 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  19. 0.392 Wife (RSP11148)
  20. 0.389 Cherry Blossom (RSP11330)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.390 JL yellow (RSP11075)
  2. 0.381 Cbot-2019-001 (RSP11129)
  3. 0.364 Feral (RSP10890)
  4. 0.356 Carmagnola (RSP10979)
  5. 0.355 Monoica (RSP10241)
  6. 0.349 Carmagnola (RSP11037)
  7. 0.345 Ivory (RSP10668)
  8. 0.343 Cbot-2019-004 (RSP11132)
  9. 0.341 Fedora 17 (RSP10661)
  10. 0.340 RKM-2018-028 (RSP11120)
  11. 0.340 Cherry (RSP11143)
  12. 0.339 Santhica27 (RSP11047)
  13. 0.338 Sour Raspberry (RSP10551)
  14. 0.338 Lovrin (RSP10658)
  15. 0.336 Futura 75 (RSP10664)
  16. 0.333 Kyrgyz Gold (RSP11054)
  17. 0.332 USO 31 (RSP10981)
  18. 0.332 Kush Hemp E1 (RSP11128)
  19. 0.332 RKM-2018-006 (RSP11097)
  20. 0.331 Black Beauty (RSP11035)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347050
Overlapping SNPs:
64
Concordance:
42

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495257
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
7c721186e08cb4e13fd417866f3f8461494f2c4cd0902605e12e8699913e6aa3
Stamping Certificate
Download PDF (848.9 KB)
SHASUM Hash
122bb88f65774de7b6d1903d0083d82a7ee0357b45f623275cdeeda88d332934
QR code for RSP11356

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