Rest

RSP 11377

Grower: Berkshire CBD

General Information

Accession Date
December 2, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Unknown

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.22%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0291
male female RSP11377

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

EMF1-2

UniProt

c.634G>C p.Val212Leu missense variant moderate contig885 734

IGV: Start, Jump

G/C
NGS:
0.015
C90:
0.239
EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
EMF1-2

UniProt

c.1384A>C p.Lys462Gln missense variant moderate contig885 2270

IGV: Start, Jump

A/C
NGS:
0.013
C90:
0.254
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>C p.Asn944His missense variant moderate contig2621 342873

IGV: Start, Jump

A/C
NGS:
0.044
C90:
0.000
PHL-2 c.2933G>T p.Arg978Leu missense variant moderate contig2621 342976

IGV: Start, Jump

G/T
NGS:
0.048
C90:
0.297
PHL-2 c.2936T>G p.Val979Gly missense variant moderate contig2621 342979

IGV: Start, Jump

T/G
NGS:
0.048
C90:
0.000
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
AAE1-1

UniProt

c.1098delT p.Cys366fs frameshift variant high contig606 3243172

IGV: Start, Jump

TA/T
NGS:
0.002
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
FAD4

UniProt

c.121G>T p.Val41Phe missense variant moderate contig784 1690873

IGV: Start, Jump

G/T
NGS:
0.044
C90:
0.000
HDS-1

UniProt

c.1475C>A p.Pro492Gln missense variant moderate contig1891 886162

IGV: Start, Jump

G/T
NGS:
0.011
C90:
0.000
EMF1-1

UniProt

c.470C>A p.Ser157Tyr missense variant moderate contig883 269959

IGV: Start, Jump

C/A
NGS:
0.013
C90:
0.239
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
AAE1-3

UniProt

c.746G>C p.Ser249Thr missense variant moderate contig976 1083108

IGV: Start, Jump

C/G
NGS:
0.004
C90:
0.000
AAE1-3

UniProt

c.667G>A p.Val223Ile missense variant moderate contig976 1083187

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
GGR

UniProt

c.280C>A p.Leu94Ile missense variant moderate contig2282 549272

IGV: Start, Jump

C/A
NGS:
0.002
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.098 TI (RSP11149)
  2. 0.129 Serious Happiness (RSP10763)
  3. 0.139 Blueberry Cheesecake (RSP10684)
  4. 0.143 Domnesia (RSP11184)
  5. 0.157 Doug s Varin (RSP11243)
  6. 0.162 Electra (RSP11366)
  7. 0.166 Queen Dream (RSP11288)
  8. 0.172 Super Blue Dream (RSP11011)
  9. 0.173 Suver Haze (RSP11364)
  10. 0.173 NSPM1 (RSP11362)
  11. 0.175 Charlotte Dream (RSP11412)
  12. 0.175 Blue Dream (RSP11004)
  13. 0.179 Queen Dream CBG (RSP11280)
  14. 0.181 Queen Dream (RSP11289)
  15. 0.181 RINGO S ANGEL (RSP10085)
  16. 0.181 MBD (RSP11368)
  17. 0.182 CPH (RSP11367)
  18. 0.185 T S A G E (RSP11351)
  19. 0.185 Queen Dream CBG (RSP11275)
  20. 0.186 Liberty Haze (RSP11000)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.154 Blueberry Cheesecake (RSP10684)
  2. 0.192 Liberty Haze (RSP11000)
  3. 0.202 RKM-2018-032 (RSP11124)
  4. 0.214 UP Sunrise (RSP10989)
  5. 0.217 Hermaphrodite ResearchSample2 (RSP11050)
  6. 0.219 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.222 Gold Cracker (RSP11048)
  8. 0.222 RKM-2018-020 (RSP11112)
  9. 0.223 RKM-2018-033 (RSP11125)
  10. 0.227 RKM-2018-026 (RSP11118)
  11. 0.228 Blueberry Cheesecake (RSP10680)
  12. 0.243 The Gift (RSP10988)
  13. 0.243 RKM-2018-009 (RSP11100)
  14. 0.245 Pie Hoe (RSP11073)
  15. 0.246 Cbot-2019-006 (RSP11134)
  16. 0.248 Cbot-2019-004 (RSP11132)
  17. 0.248 RKM-2018-003 (RSP11094)
  18. 0.251 QUEEN JESUS (RSP10105)
  19. 0.251 RKM-2018-028 (RSP11120)
  20. 0.255 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.425 80E (RSP11213)
  2. 0.406 80E (RSP11211)
  3. 0.393 CS (RSP11208)
  4. 0.373 Unknown- Cherry Wine - 001 (RSP11268)
  5. 0.372 JL yellow (RSP11075)
  6. 0.370 Carmaleonte (RSP11207)
  7. 0.370 JL 3rd Gen Father (RSP11196)
  8. 0.370 JL 4th Gen 2 (RSP11194)
  9. 0.369 Feral (RSP11206)
  10. 0.368 Feral (RSP11205)
  11. 0.368 Cherry Blossom (RSP11311)
  12. 0.367 Cherry Blossom (RSP11328)
  13. 0.365 Feral (RSP10892)
  14. 0.364 Monoica (RSP10241)
  15. 0.363 Carmagnola (RSP11202)
  16. 0.362 USO31 (RSP10233)
  17. 0.360 80E (RSP11212)
  18. 0.360 Cherry Blossom (RSP11318)
  19. 0.358 Chematonic Cannatonic x Chemdawg (RSP11394)
  20. 0.358 Unknown- Cherry Wine - 002 (RSP11269)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.378 JL yellow (RSP11075)
  2. 0.367 Monoica (RSP10241)
  3. 0.354 Feral (RSP10890)
  4. 0.350 Santhica27 (RSP11047)
  5. 0.336 Carmagnola (RSP11037)
  6. 0.333 Fedora 17 (RSP10661)
  7. 0.333 Tisza (RSP10659)
  8. 0.329 Ivory (RSP10668)
  9. 0.327 Kyrgyz Gold (RSP11054)
  10. 0.326 Carmagnola (RSP10979)
  11. 0.324 Futura 75 (RSP10664)
  12. 0.323 Cbot-2019-005 (RSP11133)
  13. 0.319 Lovrin (RSP10658)
  14. 0.318 USO 31 (RSP10981)
  15. 0.318 Cherry (RSP11142)
  16. 0.315 KYRG-11 (RSP11051)
  17. 0.313 RKM-2018-022 (RSP11114)
  18. 0.313 Blueberry Cheesecake (RSP10672)
  19. 0.309 Tisza (RSP11044)
  20. 0.307 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349156
Overlapping SNPs:
27
Concordance:
21

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495222
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
332a1e13986497f34da0a3dc6063e7edca96511cd310635f480aa6b2d7277fda
Stamping Certificate
Download PDF (39.8 KB)
SHASUM Hash
a60e35e15397a1ad912c8a30c6fc7f0480af962cb96e445935c849d2936ae168
QR code for RSP11377

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