Calm

RSP 11379

Grower: Berkshire CBD

General Information

Accession Date
December 2, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Unknown

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.06%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0246
male female RSP11379

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

EMF1-2

UniProt

c.710A>C p.His237Pro missense variant moderate contig885 810

IGV: Start, Jump

A/C
NGS:
0.090
C90:
0.474
PHL-2 c.237T>A p.Ser79Arg missense variant moderate contig2621 338802

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.000
PHL-2 c.238T>A p.Leu80Ile missense variant moderate contig2621 338803

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.000
PHL-2 c.239T>C p.Leu80Ser missense variant moderate contig2621 338804

IGV: Start, Jump

T/C
NGS:
0.002
C90:
0.000
PHL-2 c.590T>C p.Met197Thr missense variant moderate contig2621 339583

IGV: Start, Jump

T/C
NGS:
0.007
C90:
0.000
PHL-2 c.1422C>A p.Asn474Lys missense variant moderate contig2621 340700

IGV: Start, Jump

C/A
NGS:
0.007
C90:
0.000
PHL-2 c.1528C>T p.Arg510Trp missense variant moderate contig2621 340806

IGV: Start, Jump

C/T
NGS:
0.002
C90:
0.000
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.2830A>C p.Asn944His missense variant moderate contig2621 342873

IGV: Start, Jump

A/C
NGS:
0.044
C90:
0.000
PHL-2 c.2933G>T p.Arg978Leu missense variant moderate contig2621 342976

IGV: Start, Jump

G/T
NGS:
0.048
C90:
0.297
PHL-2 c.2936T>G p.Val979Gly missense variant moderate contig2621 342979

IGV: Start, Jump

T/G
NGS:
0.048
C90:
0.000
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
OAC-1

UniProt

c.260C>G p.Ser87Cys missense variant moderate contig931 118104

IGV: Start, Jump

G/C
NGS:
0.053
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.520A>C p.Asn174His missense variant moderate contig97 242226

IGV: Start, Jump

A/C
NGS:
0.094
C90:
0.502
ELF3

UniProt

c.752G>T p.Gly251Val missense variant moderate contig97 242458

IGV: Start, Jump

G/T
NGS:
0.022
C90:
0.139
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>C p.Gly271Ala missense variant moderate contig97 242518

IGV: Start, Jump

G/C
NGS:
0.114
C90:
0.938
ELF3

UniProt

c.1230-2_1230-1delAG splice acceptor variant & intron variant high contig97 243676

IGV: Start, Jump

TAG/T
NGS:
0.088
C90:
0.450
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
AAE1-2

UniProt

c.205T>A p.Ser69Thr missense variant moderate contig81 209167

IGV: Start, Jump

T/A
NGS:
0.013
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
HDS-1

UniProt

c.1618A>G p.Ile540Val missense variant moderate contig1891 885936

IGV: Start, Jump

T/C
NGS:
0.099
C90:
0.861
EMF1-1

UniProt

c.470C>A p.Ser157Tyr missense variant moderate contig883 269959

IGV: Start, Jump

C/A
NGS:
0.013
C90:
0.239
FT

UniProt

c.13C>G p.Leu5Val missense variant moderate contig1561 3124437

IGV: Start, Jump

C/G
NGS:
0.031
C90:
0.153
FT

UniProt

c.240C>G p.Asn80Lys missense variant moderate contig1561 3124664

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.000
FT

UniProt

c.259+1_259+2insTA splice donor variant & intron variant high contig1561 3124684

IGV: Start, Jump

G/GTA
NGS:
0.015
C90:
0.077
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
FLD

UniProt

c.2964C>A p.Asp988Glu missense variant moderate contig1450 2044029

IGV: Start, Jump

G/T
NGS:
0.057
C90:
0.464
AAE1-3

UniProt

c.199A>G p.Asn67Asp missense variant moderate contig976 1083876

IGV: Start, Jump

T/C
NGS:
0.079
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.106 Lift (RSP11378)
  2. 0.110 Suver Haze (RSP11364)
  3. 0.116 UP Sunrise (RSP10989)
  4. 0.129 Electra (RSP11366)
  5. 0.146 Queen Dream CBG (RSP11281)
  6. 0.150 Doug s Varin (RSP11243)
  7. 0.156 Lifter (RSP11365)
  8. 0.158 Serious Happiness (RSP10763)
  9. 0.166 Alaska (RSP10939)
  10. 0.167 Blue Dream (RSP11004)
  11. 0.177 Blue Dream (RSP11009)
  12. 0.180 Queen Dream CBG (RSP11285)
  13. 0.184 Blue Dream (RSP11010)
  14. 0.184 Cherry Blossom (RSP11315)
  15. 0.185 PWE (RSP11369)
  16. 0.186 Queen Dream CBG (RSP11282)
  17. 0.186 Hot Blonde (RSP11290)
  18. 0.189 Blue Dream (RSP11017)
  19. 0.190 Domnesia (RSP11184)
  20. 0.190 Blue Dream (RSP11007)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.118 UP Sunrise (RSP10989)
  2. 0.213 Liberty Haze (RSP11000)
  3. 0.224 Blueberry Cheesecake (RSP10684)
  4. 0.226 Cbot-2019-001 (RSP11129)
  5. 0.236 Durban Poison (RSP11014)
  6. 0.244 Blue Dream (RSP11033)
  7. 0.249 Cherry (RSP11142)
  8. 0.257 Gold Cracker (RSP11048)
  9. 0.258 CST (RSP11002)
  10. 0.262 Italian Kiss (RSP11034)
  11. 0.267 RKM-2018-027 (RSP11119)
  12. 0.267 RKM-2018-006 (RSP11097)
  13. 0.267 RKM-2018-031 (RSP11123)
  14. 0.269 Blueberry Cheesecake (RSP10672)
  15. 0.274 RKM-2018-009 (RSP11100)
  16. 0.284 Cherry (RSP11143)
  17. 0.288 RKM-2018-018 (RSP11110)
  18. 0.289 RKM-2018-003 (RSP11094)
  19. 0.293 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.295 QUEEN JESUS (RSP10105)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.422 80E (RSP11213)
  2. 0.420 Feral (RSP11205)
  3. 0.414 Red Eye OG (RSP11190)
  4. 0.410 80E (RSP11211)
  5. 0.409 Feral (RSP10891)
  6. 0.407 Carmagnola (RSP11202)
  7. 0.406 RKM-2018-012 (RSP11103)
  8. 0.403 Kush Hemp E1 (RSP11128)
  9. 0.399 Feral (RSP10890)
  10. 0.397 Feral (RSP10892)
  11. 0.397 Carmaleonte (RSP11207)
  12. 0.391 80E (RSP11212)
  13. 0.386 RKM-2018-026 (RSP11118)
  14. 0.385 Rugburn OG (RSP11353)
  15. 0.384 Skunk 18 (RSP11038)
  16. 0.383 Diana (RSP10235)
  17. 0.383 Monoica (RSP10241)
  18. 0.383 USO31 (RSP10233)
  19. 0.382 Skywalker OG (RSP10837)
  20. 0.382 Santhica27 (RSP11047)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.414 Kush Hemp E1 (RSP11128)
  2. 0.401 Feral (RSP10890)
  3. 0.397 Skunk 18 (RSP11038)
  4. 0.392 RKM-2018-026 (RSP11118)
  5. 0.384 Skywalker OG (RSP10837)
  6. 0.384 Santhica27 (RSP11047)
  7. 0.383 Monoica (RSP10241)
  8. 0.381 JL yellow (RSP11075)
  9. 0.380 RKM-2018-002 (RSP11093)
  10. 0.372 Tisza (RSP11044)
  11. 0.367 Carmagnola (RSP11037)
  12. 0.362 KYRG-11 (RSP11051)
  13. 0.360 RKM-2018-022 (RSP11114)
  14. 0.360 Fedora 17 (RSP10661)
  15. 0.355 Jiangji (RSP10653)
  16. 0.354 RKM-2018-034 (RSP11126)
  17. 0.354 Lovrin (RSP10658)
  18. 0.353 The Gift (RSP10988)
  19. 0.353 Black Beauty (RSP11035)
  20. 0.353 Futura 75 (RSP10664)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4451091
Overlapping SNPs:
34
Concordance:
25

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495236
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
61de66e22e71019982cd6073bd5c58e9fcf3a8d77e42b3a55e4fb63ef4051975
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
cb8b1834a1e1542fc028cf6743b7d93ca7f8cd061ffd4b13bf77fc17c74ab747
QR code for RSP11379

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