Calm
RSP 11379
Grower: Berkshire CBD
General Information
- Accession Date
- December 2, 2019
- Reported Plant Sex
- Female
- Report Type
- Whole-Genome Sequencing
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Unknown
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
EMF1-2 | c.710A>C | p.His237Pro | missense variant | moderate | contig885 | 810 | A/C | |
PHL-2 | c.237T>A | p.Ser79Arg | missense variant | moderate | contig2621 | 338802 | T/A |
|
PHL-2 | c.238T>A | p.Leu80Ile | missense variant | moderate | contig2621 | 338803 | T/A |
|
PHL-2 | c.239T>C | p.Leu80Ser | missense variant | moderate | contig2621 | 338804 | T/C |
|
PHL-2 | c.590T>C | p.Met197Thr | missense variant | moderate | contig2621 | 339583 | T/C |
|
PHL-2 | c.1422C>A | p.Asn474Lys | missense variant | moderate | contig2621 | 340700 | C/A |
|
PHL-2 | c.1528C>T | p.Arg510Trp | missense variant | moderate | contig2621 | 340806 | C/T |
|
PHL-2 | c.2783G>A | p.Ser928Asn | missense variant | moderate | contig2621 | 342826 | G/A | |
PHL-2 | c.2830A>C | p.Asn944His | missense variant | moderate | contig2621 | 342873 | A/C |
|
PHL-2 | c.2933G>T | p.Arg978Leu | missense variant | moderate | contig2621 | 342976 | G/T | |
PHL-2 | c.2936T>G | p.Val979Gly | missense variant | moderate | contig2621 | 342979 | T/G |
|
PHL-2 | c.3209A>G | p.Gln1070Arg | missense variant | moderate | contig2621 | 343252 | A/G | |
PHL-2 | c.3467A>G | p.Gln1156Arg | missense variant | moderate | contig2621 | 343510 | A/G | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
OAC-1 | c.260C>G | p.Ser87Cys | missense variant | moderate | contig931 | 118104 | G/C |
|
ELF3 | c.358G>A | p.Gly120Arg | missense variant | moderate | contig97 | 242064 | G/A | |
ELF3 | c.520A>C | p.Asn174His | missense variant | moderate | contig97 | 242226 | A/C | |
ELF3 | c.752G>T | p.Gly251Val | missense variant | moderate | contig97 | 242458 | G/T | |
ELF3 | c.772A>G | p.Ser258Gly | missense variant | moderate | contig97 | 242478 | A/G |
|
ELF3 | c.812G>C | p.Gly271Ala | missense variant | moderate | contig97 | 242518 | G/C | |
ELF3 |
c.1230-2_123 |
splice acceptor variant & intron variant | high | contig97 | 243676 | TAG/T | ||
ELF3 | c.1466G>A | p.Ser489Asn | missense variant | moderate | contig97 | 244297 | G/A |
|
ELF3 | c.1630A>G | p.Thr544Ala | missense variant | moderate | contig97 | 244461 | A/G | |
ELF3 | c.1966C>G | p.Pro656Ala | missense variant | moderate | contig97 | 244797 | C/G | |
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
AAE1-2 | c.205T>A | p.Ser69Thr | missense variant | moderate | contig81 | 209167 | T/A |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
HDS-1 | c.1618A>G | p.Ile540Val | missense variant | moderate | contig1891 | 885936 | T/C | |
EMF1-1 | c.470C>A | p.Ser157Tyr | missense variant | moderate | contig883 | 269959 | C/A | |
FT | c.13C>G | p.Leu5Val | missense variant | moderate | contig1561 | 3124437 | C/G | |
FT | c.240C>G | p.Asn80Lys | missense variant | moderate | contig1561 | 3124664 | C/G |
|
FT |
c.259+1_259+ |
splice donor variant & intron variant | high | contig1561 | 3124684 | G/GTA | ||
FLD | c.2981T>C | p.Met994Thr | missense variant | moderate | contig1450 | 2044012 | A/G | |
FLD | c.2964C>A | p.Asp988Glu | missense variant | moderate | contig1450 | 2044029 | G/T | |
AAE1-3 | c.199A>G | p.Asn67Asp | missense variant | moderate | contig976 | 1083876 | T/C |
|
AAE1-3 | c.188A>G | p.Asn63Ser | missense variant | moderate | contig976 | 1083887 | T/C |
|
Nearest genetic relatives (All Samples)
- 0.104 UP Sunrise (RSP10989)
- 0.120 Lift (RSP11378)
- 0.132 Suver Haze (RSP11364)
- 0.151 Electra (RSP11366)
- 0.153 Blue Dream (RSP11010)
- 0.156 Serious Happiness (RSP10763)
- 0.158 Blue Dream (RSP11004)
- 0.160 Lifter (RSP11365)
- 0.169 Queen Dream CBG (RSP11281)
- 0.171 Doug s Varin (RSP11243)
- 0.177 Queen Dream CBG (RSP11285)
- 0.181 Green Crack (RSP11339)
- 0.181 Blue Dream (RSP11009)
- 0.181 Joy (RSP11380)
- 0.185 Blue Dream (RSP11017)
- 0.186 Durban Poison #1 (RSP10996)
- 0.186 Domnesia (RSP11184)
- 0.187 Blue Dream (RSP11007)
- 0.188 PWE (RSP11369)
- 0.189 Dave Pineapple (RSP11626)
Nearest genetic relatives (Base Tree)
- 0.108 UP Sunrise (RSP10989)
- 0.213 Liberty Haze (RSP11000)
- 0.232 Durban Poison (RSP11014)
- 0.235 Cbot-2019-001 (RSP11129)
- 0.235 Cherry (RSP11142)
- 0.239 Blue Dream (RSP11033)
- 0.240 Blueberry Cheesecake (RSP10684)
- 0.241 Gold Cracker (RSP11048)
- 0.251 Italian Kiss (RSP11034)
- 0.254 CST (RSP11002)
- 0.259 RKM-2018-031 (RSP11123)
- 0.263 Blueberry Cheesecake (RSP10672)
- 0.264 RKM-2018-006 (RSP11097)
- 0.266 RKM-2018-027 (RSP11119)
- 0.279 RKM-2018-009 (RSP11100)
- 0.282 RKM-2018-003 (RSP11094)
- 0.282 Queen Jesus (RSP10105)
- 0.283 Hermaphrodite Research Sample1 (RSP11049)
- 0.284 Golden Goat 2 (RSP10991)
- 0.285 Recon (RSP10755)
Most genetically distant strains (All Samples)
- 0.433 Fatso (RSP11741)
- 0.428 Feral (RSP11205)
- 0.426 BagSeed (RSP12627)
- 0.418 Ruderalis Indica (SRR14708267)
- 0.416 Feral (RSP10890)
- 0.416 R3in134 (SRR14708235)
- 0.416 BagSeed (RSP12501)
- 0.414 80E (RSP11213)
- 0.413 Red Eye OG (RSP11190)
- 0.411 Big Bud (SRR14708270)
- 0.408 R3in134 (SRR14708220)
- 0.406 80E (RSP11211)
- 0.405 R3in134 (SRR14708218)
- 0.405 R1in136 (SRR14708226)
- 0.405 Kush Hemp E1 (RSP11128)
- 0.403 Feral (RSP10891)
- 0.402 R1in136 (SRR14708237)
- 0.400 RKM-2018-012 (RSP11103)
- 0.400 XBL1 (SRR14708207)
- 0.399 Rugburn OG (RSP11353)
Most genetically distant strains (Base Tree)
- 0.409 RKM-2018-026 (RSP11118)
- 0.402 Feral (RSP10890)
- 0.401 Kush Hemp E1 (RSP11128)
- 0.392 RKM-2018-002 (RSP11093)
- 0.392 Monoica (RSP10241)
- 0.386 JL yellow (RSP11075)
- 0.380 Skunk#18 (RSP11038)
- 0.379 Carmagnola (RSP11037)
- 0.378 Skywalker OG (RSP10837)
- 0.376 Santhica27 (RSP11047)
- 0.372 KYRG-11 (RSP11051)
- 0.370 Futura 75 (RSP10664)
- 0.369 Jiangji (RSP10653)
- 0.368 Tisza (RSP11044)
- 0.366 Kyrgyz Gold (RSP11054)
- 0.362 Black Beauty (RSP11035)
- 0.361 Fedora 17 (RSP10661)
- 0.349 RKM-2018-022 (RSP11114)
- 0.346 RKM-2018-032 (RSP11124)
- 0.345 RKM-2018-034 (RSP11126)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 34
- Concordance:
- 25
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 6
- Concordance:
- 6
Blockchain Registration Information
- Transaction ID
-
61de66e22e710199
82cd6073bd5c58e9 fcf3a8d77e42b3a5 5e4fb63ef4051975 - Stamping Certificate
- Download PDF (39.7 KB)
- SHASUM Hash
-
cb8b1834a1e1542f
c028cf6743b7d93c a7f8cd061ffd4b13 bf77fc17c74ab747