Chematonic (Cannatonic x Chemdawg)

RSP 11394

Grower: Farmer Freeman

General Information

Sample Name
Farmer Freeman Hemp #1
Accession Date
December 26, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.93%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0423
male female RSP11394

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.223 Cbot-2019-001 (RSP11129)
  2. 0.244 Wife (RSP11148)
  3. 0.245 Cherry (RSP11143)
  4. 0.252 Alaska (RSP10939)
  5. 0.255 Blue Dream (RSP11004)
  6. 0.255 Blue Dream (RSP11009)
  7. 0.261 Midnight (RSP10941)
  8. 0.264 Queen Dream CBG (RSP11281)
  9. 0.269 AVIDEKEL USA (RSP11169)
  10. 0.270 Blue Dream (RSP11017)
  11. 0.274 Queen Dream CBG (RSP11276)
  12. 0.275 Blue Dream (RSP11007)
  13. 0.276 Cbot-2019-003 (RSP11131)
  14. 0.279 101st AIRBORN CBD (RSP11350)
  15. 0.279 Cherry Wine (RSP11305)
  16. 0.281 Cherry Wine (RSP11307)
  17. 0.281 Blue Dream (RSP11006)
  18. 0.286 Hot Blonde (RSP11292)
  19. 0.287 Super Blue Dream (RSP11011)
  20. 0.288 Blue Dream (RSP11012)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.230 Cbot-2019-001 (RSP11129)
  2. 0.250 Cherry (RSP11143)
  3. 0.300 Blueberry Cheesecake (RSP10672)
  4. 0.319 Blue Dream (RSP11033)
  5. 0.332 Sour Raspberry (RSP10551)
  6. 0.333 RKM-2018-005 (RSP11096)
  7. 0.334 CST (RSP11002)
  8. 0.335 Liberty Haze (RSP11000)
  9. 0.336 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.342 RKM-2018-031 (RSP11123)
  11. 0.344 Durban Poison (RSP11014)
  12. 0.344 RKM-2018-009 (RSP11100)
  13. 0.346 UP Sunrise (RSP10989)
  14. 0.348 RKM-2018-002 (RSP11093)
  15. 0.348 Blueberry Cheesecake (RSP10684)
  16. 0.349 RKM-2018-032 (RSP11124)
  17. 0.352 Golden Goat 2 (RSP10991)
  18. 0.353 RKM-2018-029 (RSP11121)
  19. 0.353 Blueberry Cheesecake (RSP10680)
  20. 0.359 RKM-2018-006 (RSP11097)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.474 Eran Almog (RSP10937)
  2. 0.460 Unknown- Cherry Wine - 004 (RSP11271)
  3. 0.460 80E (RSP11213)
  4. 0.460 Cherry Blossom (RSP11334)
  5. 0.459 Cherry Blossom (RSP11326)
  6. 0.459 80E (RSP11212)
  7. 0.458 Cherry Blossom (RSP11308)
  8. 0.455 Cherry Blossom (RSP11335)
  9. 0.451 80E (RSP11211)
  10. 0.449 Square Wave (RSP11344)
  11. 0.446 Cherry Blossom (RSP11324)
  12. 0.445 JL 3rd Gen Father (RSP11196)
  13. 0.445 Cherry Blossom (RSP11314)
  14. 0.444 USO 31 (RSP10983)
  15. 0.442 Cherry Blossom (RSP11317)
  16. 0.442 RKM-2018-022 (RSP11114)
  17. 0.440 Carmaleonte (RSP11207)
  18. 0.440 White Label 1 (RSP11336)
  19. 0.437 Kush Hemp E1 (RSP11128)
  20. 0.436 Feral (RSP11205)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.445 RKM-2018-022 (RSP11114)
  2. 0.444 Kush Hemp E1 (RSP11128)
  3. 0.441 RKM-2018-019 (RSP11111)
  4. 0.437 USO 31 (RSP10981)
  5. 0.428 RKM-2018-026 (RSP11118)
  6. 0.426 Tygra (RSP10667)
  7. 0.424 Fedora 17 (RSP10661)
  8. 0.419 Monoica (RSP10241)
  9. 0.418 Santhica27 (RSP11047)
  10. 0.415 Kyrgyz Gold (RSP11054)
  11. 0.415 Lovrin (RSP10658)
  12. 0.414 Feral (RSP10890)
  13. 0.410 RKM-2018-034 (RSP11126)
  14. 0.410 Tisza (RSP11044)
  15. 0.408 Carmagnola (RSP11037)
  16. 0.407 Futura 75 (RSP10664)
  17. 0.404 Carmagnola (RSP10979)
  18. 0.404 Cbot-2019-006 (RSP11134)
  19. 0.403 Black Beauty (RSP11035)
  20. 0.403 Ivory (RSP10668)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448668
Overlapping SNPs:
73
Concordance:
54

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

SHASUM Hash
629757478246a92efec0939e83f4489d670a8fc345eca5a716d39ead9735eb5f
QR code for RSP11394

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