Swiss Dream

RSP 11408

Grower: Altman Specialty Plants, LLC

General Information

Accession Date
January 1, 2020
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.32%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0514
male female RSP11408

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

CBDAS c.221C>G p.Thr74Ser missense variant moderate contig1772 2082447

IGV: Start, Jump

C/G
NGS:
0.136
C90:
0.057
CBDAS c.1420A>C p.Lys474Gln missense variant moderate contig1772 2083646

IGV: Start, Jump

A/C
NGS:
0.132
C90:
0.813

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.67A>T p.Ile23Phe missense variant moderate contig700 1951815

IGV: Start, Jump

T/A
NGS:
0.033
C90:
0.325
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.544G>T p.Gly182Trp missense variant moderate contig700 2721129

IGV: Start, Jump

C/A
NGS:
0.055
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.338G>A p.Gly113Glu missense variant moderate contig700 2721335

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.80A>G p.Lys27Arg missense variant moderate contig121 2828736

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
aPT1

UniProt

c.864C>G p.Asn288Lys missense variant moderate contig121 2842407

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.062
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.255 Lift (RSP11378)
  2. 0.262 Electra (RSP11366)
  3. 0.263 Domnesia (RSP11184)
  4. 0.265 Suver Haze (RSP11364)
  5. 0.270 Liberty Haze (RSP11000)
  6. 0.272 Serious Happiness (RSP10763)
  7. 0.272 Eagle Scout T-111 (RSP11625)
  8. 0.275 C-930 lot 211005 (RSP12603)
  9. 0.280 Lifter (RSP11365)
  10. 0.282 Calm (RSP11379)
  11. 0.283 Tisza (RSP10659)
  12. 0.284 Brunswick High (RSP11164)
  13. 0.284 Master Kush (RSP11182)
  14. 0.286 Queen Dream CBG (RSP11276)
  15. 0.286 Hawaii Maui Waui (SRR14708262)
  16. 0.287 Tygra (RSP10667)
  17. 0.288 Queen Dream CBG (RSP11296)
  18. 0.288 Queen Dream CBG (RSP11294)
  19. 0.289 Durban Poison #1 (RSP11013)
  20. 0.290 Queen Dream CBG (RSP11281)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.282 Tisza (RSP10659)
  2. 0.286 UP Sunrise (RSP10989)
  3. 0.292 Liberty Haze (RSP11000)
  4. 0.301 Tygra (RSP10667)
  5. 0.306 Kyrgyz Gold (RSP11054)
  6. 0.307 RKM-2018-019 (RSP11111)
  7. 0.307 Blueberry Cheesecake (RSP10684)
  8. 0.309 Tisza (RSP11044)
  9. 0.315 Cherry (RSP11143)
  10. 0.320 RKM-2018-031 (RSP11123)
  11. 0.322 Recon (RSP10755)
  12. 0.323 Queen Jesus (RSP10105)
  13. 0.324 Lovrin (RSP10658)
  14. 0.326 Carmagnola (RSP10979)
  15. 0.326 KYRG-11 (RSP11051)
  16. 0.329 Jiangji (RSP10653)
  17. 0.331 Durban Poison (RSP11014)
  18. 0.333 Futura 75 (RSP10664)
  19. 0.333 Monoica (RSP10241)
  20. 0.333 Blueberry Cheesecake (RSP10680)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.463 Cherry Blossom (RSP11301)
  2. 0.455 JL yellow (RSP11075)
  3. 0.450 JL 3rd Gen Mother (RSP11214)
  4. 0.448 AVIDEKEL 2 0 (RSP11174)
  5. 0.444 Unknown--Cherry Wine---001- (RSP11268)
  6. 0.442 JL 3rd Gen Mother (RSP11197)
  7. 0.438 Cherry Blossom (RSP11323)
  8. 0.437 Danny Noonan (RSP11070)
  9. 0.432 Cherry Blossom (RSP11309)
  10. 0.427 Cherry Blossom (RSP11298)
  11. 0.425 JL 4th Gen 2 (RSP11194)
  12. 0.425 Cbot-2019-005 (RSP11133)
  13. 0.423 Unknown--Cherry Wine---002- (RSP11269)
  14. 0.422 Kush Hemp E1 (RSP11128)
  15. 0.419 GG4 (RSP11978)
  16. 0.419 Cherry Blossom CBG (RSP11303)
  17. 0.418 Chem 91 (RSP11185)
  18. 0.416 New York City Deisel (RSP11225)
  19. 0.416 WO DC (RSP11413)
  20. 0.414 Tanao Sri -46- (RSP11486)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.455 JL yellow (RSP11075)
  2. 0.435 Cbot-2019-005 (RSP11133)
  3. 0.424 Kush Hemp E1 (RSP11128)
  4. 0.413 RKM-2018-002 (RSP11093)
  5. 0.402 RKM-2018-006 (RSP11097)
  6. 0.401 Cbot-2019-004 (RSP11132)
  7. 0.401 Blue Dream (RSP11033)
  8. 0.399 RKM-2018-032 (RSP11124)
  9. 0.398 Skunk#18 (RSP11038)
  10. 0.396 RKM-2018-026 (RSP11118)
  11. 0.387 Skywalker OG (RSP10837)
  12. 0.386 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.384 RKM-2018-027 (RSP11119)
  14. 0.383 Italian Kiss (RSP11034)
  15. 0.383 RKM-2018-028 (RSP11120)
  16. 0.383 RKM-2018-034 (RSP11126)
  17. 0.379 RKM-2018-003 (RSP11094)
  18. 0.378 CST (RSP11002)
  19. 0.377 Sour Raspberry (RSP10551)
  20. 0.376 RKM-2018-018 (RSP11110)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448571
Overlapping SNPs:
73
Concordance:
40

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
d0e07cc50e3983dde953177063e080a840a1429507e566a7eb2a1732a44b0ee3
Stamping Certificate
Download PDF (39.9 KB)
SHASUM Hash
e662f24ec055bceb02b215588269311d42c9a8de9d8e8704a97098f90f6ceb75
QR code for RSP11408

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