YMCM

RSP 11416

Grower: Hope Springs Memorial Farm LLC

General Information

Sample Name
Yummy x Cmass
Accession Date
January 6, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.92%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0374
male female RSP11416

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.64G>T p.Ala22Ser missense variant moderate contig83 1803305

IGV: Start, Jump

C/A
NGS:
0.048
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.251 Cbot-2019-003 (RSP11131)
  2. 0.257 Purple Strawberry AK47 1 1 (RSP11415)
  3. 0.266 101st AIRBORN CBD (RSP11350)
  4. 0.272 CANNATONIC (RSP11349)
  5. 0.274 MBD (RSP11368)
  6. 0.275 Cbot-2019-002 (RSP11130)
  7. 0.276 Blueberry Cheesecake (RSP10684)
  8. 0.278 Tahoe OG (RSP11189)
  9. 0.280 Golden Road (RSP11345)
  10. 0.282 RKM-2018-006 (RSP11097)
  11. 0.283 Domnesia (RSP11184)
  12. 0.286 Charlotte Dream (RSP11412)
  13. 0.291 Saint Jack (RSP11179)
  14. 0.292 Doug s Varin (RSP11243)
  15. 0.294 Cherry Blossom (RSP11316)
  16. 0.296 Durban Poison 1 (RSP11013)
  17. 0.296 Cbot-2019-004 (RSP11132)
  18. 0.300 Queen Dream CBG (RSP11297)
  19. 0.302 Unknown- Cherry Wine - 005 (RSP11272)
  20. 0.302 Hermaphrodite ResearchSample2 (RSP11050)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.289 Blueberry Cheesecake (RSP10684)
  2. 0.292 Cbot-2019-004 (RSP11132)
  3. 0.292 RKM-2018-006 (RSP11097)
  4. 0.304 Liberty Haze (RSP11000)
  5. 0.306 Hermaphrodite ResearchSample2 (RSP11050)
  6. 0.316 RKM-2018-003 (RSP11094)
  7. 0.320 Black Beauty (RSP11035)
  8. 0.324 Durban Poison (RSP11014)
  9. 0.333 Cbot-2019-001 (RSP11129)
  10. 0.333 RKM-2018-031 (RSP11123)
  11. 0.334 RKM-2018-020 (RSP11112)
  12. 0.334 Blueberry Cheesecake (RSP10680)
  13. 0.339 Golden Goat 2 (RSP10991)
  14. 0.343 RKM-2018-034 (RSP11126)
  15. 0.343 RKM-2018-029 (RSP11121)
  16. 0.346 RKM-2018-022 (RSP11114)
  17. 0.346 QUEEN JESUS (RSP10105)
  18. 0.346 RKM-2018-019 (RSP11111)
  19. 0.350 Cbot-2019-005 (RSP11133)
  20. 0.352 Sour Raspberry (RSP10551)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.456 80E (RSP11213)
  2. 0.444 80E (RSP11211)
  3. 0.443 Cherry Blossom (RSP11334)
  4. 0.439 80E (RSP11212)
  5. 0.434 Cherry Blossom (RSP11301)
  6. 0.428 Carmagnola (RSP11202)
  7. 0.428 Cherry Blossom (RSP11323)
  8. 0.426 Feral (RSP11205)
  9. 0.426 Carmaleonte (RSP11207)
  10. 0.424 CS (RSP11208)
  11. 0.423 Santhica27 (RSP10056)
  12. 0.423 Cherry Blossom (RSP11318)
  13. 0.423 Feral (RSP11206)
  14. 0.422 Monoica (RSP10241)
  15. 0.421 Abacus (RSP11266)
  16. 0.421 Carmagnola USO 31 (RSP11204)
  17. 0.420 Santhica27 (RSP11047)
  18. 0.418 USO 31 (RSP10983)
  19. 0.418 Cherry Blossom (RSP11333)
  20. 0.417 Morning Light (RSP11409)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.425 Cherry (RSP11142)
  2. 0.424 Ivory (RSP10668)
  3. 0.416 Monoica (RSP10241)
  4. 0.413 Santhica27 (RSP11047)
  5. 0.408 Tygra (RSP10667)
  6. 0.407 Carmagnola (RSP11037)
  7. 0.405 Tisza (RSP11044)
  8. 0.403 Lovrin (RSP10658)
  9. 0.403 Cherry (RSP11143)
  10. 0.400 Kyrgyz Gold (RSP11054)
  11. 0.400 JL yellow (RSP11075)
  12. 0.398 Feral (RSP10890)
  13. 0.398 Tisza (RSP10659)
  14. 0.396 Fedora 17 (RSP10661)
  15. 0.394 Futura 75 (RSP10664)
  16. 0.394 Carmagnola (RSP10979)
  17. 0.390 Blue Dream (RSP11033)
  18. 0.390 Kush Hemp E1 (RSP11128)
  19. 0.387 RKM-2018-002 (RSP11093)
  20. 0.384 USO 31 (RSP10981)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347199
Overlapping SNPs:
73
Concordance:
49

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495314
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
46ad8cb5532de00fde4e58838d552e9cf8269758ad21a624701e795b5cf205fa
Stamping Certificate
Download PDF (39.8 KB)
SHASUM Hash
754e603904480bf020ae7982677478dc5cfb6245f60162844cd11639ab038233
QR code for RSP11416

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