Torrey

RSP 11449

Grower: Blue Forest Farms

General Information

Sample Name
30
Accession Date
March 31, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.2%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0473
male female RSP11449

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2a

UniProt

c.-2_1delATA p.Met1del start lost & conservative inframe deletion high contig700 1945632

IGV: Start, Jump

ATAT/A
NGS:
0.009
C90:
0.000
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-2

UniProt

c.679G>C p.Gly227Arg missense variant moderate contig95 1990632

IGV: Start, Jump

G/C
NGS:
0.037
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.253 Tisza (RSP10659)
  2. 0.258 C-930 lot 211005 (RSP12603)
  3. 0.260 Tygra (RSP10667)
  4. 0.263 Tisza (RSP11045)
  5. 0.263 Santhica 27 (RSP10665)
  6. 0.267 KYRG-151 (RSP11052)
  7. 0.268 Carmagnola (RSP11039)
  8. 0.269 Carmagnola (RSP10982)
  9. 0.269 Carmagnola (RSP10976)
  10. 0.270 Carmagnola (RSP10977)
  11. 0.272 Uniko B (SRR14708278)
  12. 0.273 Tisza (RSP11044)
  13. 0.273 Santhica27 (RSP10056)
  14. 0.275 KYRG-11 (RSP11051)
  15. 0.275 R2in135 (SRR14708223)
  16. 0.276 Blueberry Cheesecake (RSP10684)
  17. 0.277 USO 31 (RSP10981)
  18. 0.279 Carmagnola (RSP10979)
  19. 0.280 Carmagnola (RSP10980)
  20. 0.280 Carmagnola (RSP11037)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.251 Tygra (RSP10667)
  2. 0.263 Tisza (RSP10659)
  3. 0.267 Futura 75 (RSP10664)
  4. 0.271 Tisza (RSP11044)
  5. 0.275 Fedora 17 (RSP10661)
  6. 0.279 USO 31 (RSP10981)
  7. 0.280 Kimbo Slice (RSP10997)
  8. 0.280 Lovrin (RSP10658)
  9. 0.280 Carmagnola (RSP11037)
  10. 0.284 Pie Hoe (RSP11073)
  11. 0.285 KYRG-11 (RSP11051)
  12. 0.289 Carmagnola (RSP10979)
  13. 0.290 Kyrgyz Gold (RSP11054)
  14. 0.292 Jiangji (RSP10653)
  15. 0.294 Ivory (RSP10668)
  16. 0.296 Feral (RSP10890)
  17. 0.296 Santhica27 (RSP11047)
  18. 0.300 Recon (RSP10755)
  19. 0.303 Monoica (RSP10241)
  20. 0.306 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.461 Cherry Blossom (RSP11300)
  2. 0.460 Cherry Blossom (RSP11301)
  3. 0.459 Chem 91 (RSP11185)
  4. 0.432 Medxotic (RSP11410)
  5. 0.432 Cherry Blossom (RSP11325)
  6. 0.427 AVIDEKEL 2 0 (RSP11174)
  7. 0.422 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  8. 0.421 Cherry Blossom (RSP11312)
  9. 0.421 JL Cross 13 (RSP11514)
  10. 0.419 Cherry Blossom (RSP11306)
  11. 0.419 Cherry Blossom (RSP11318)
  12. 0.418 Wife (RSP11148)
  13. 0.418 Cherry Blossom (RSP11323)
  14. 0.417 Cherry Blossom (RSP11322)
  15. 0.417 JL Cross 1 (RSP11502)
  16. 0.416 B52 (SRR14708255)
  17. 0.416 QLE1 (RSP11451)
  18. 0.416 Cherry Blossom (RSP11309)
  19. 0.415 Dave Pineapple (RSP11626)
  20. 0.415 Wilburs Great Adventure (RSP11727)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.408 RKM-2018-002 (RSP11093)
  2. 0.399 Cbot-2019-005 (RSP11133)
  3. 0.396 RKM-2018-028 (RSP11120)
  4. 0.386 RKM-2018-009 (RSP11100)
  5. 0.379 Cbot-2019-001 (RSP11129)
  6. 0.379 Cbot-2019-004 (RSP11132)
  7. 0.378 Sour Raspberry (RSP10551)
  8. 0.377 RKM-2018-006 (RSP11097)
  9. 0.376 RKM-2018-033 (RSP11125)
  10. 0.375 Kush Hemp E1 (RSP11128)
  11. 0.370 Skywalker OG (RSP10837)
  12. 0.370 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.370 RKM-2018-026 (RSP11118)
  14. 0.366 RKM-2018-004 (RSP11096)
  15. 0.364 Cherry (RSP11142)
  16. 0.364 Skunk#18 (RSP11038)
  17. 0.364 RKM-2018-031 (RSP11123)
  18. 0.359 RKM-2018-018 (RSP11110)
  19. 0.358 RKM-2018-032 (RSP11124)
  20. 0.357 Blue Dream (RSP11033)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347101
Overlapping SNPs:
74
Concordance:
53

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495168
Overlapping SNPs:
5
Concordance:
4

Blockchain Registration Information

Transaction ID
c678025fe8657e61fe2d3bb7e053e63ddbca7e40af74bab5737dd36a67e06892
Stamping Certificate
Download PDF (39.9 KB)
SHASUM Hash
3c6fa92d4917a3b7a1c9ec8c6881a210933f4e06217a2f2fdd14b8a746ea62d9
QR code for RSP11449

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