Trump x Trump

RSP 11466

Grower: Kevin McKernan

General Information

Accession Date
May 6, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.14%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0509
male female RSP11466

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.069 Rest (RSP11377)
  2. 0.091 TI (RSP11149)
  3. 0.109 Domnesia (RSP11184)
  4. 0.115 Blueberry Cheesecake (RSP10684)
  5. 0.134 Electra (RSP11366)
  6. 0.145 CBG- 40 (RSP11444)
  7. 0.152 Suver Haze (RSP11364)
  8. 0.153 Doug s Varin (RSP11243)
  9. 0.153 Joy (RSP11380)
  10. 0.153 Serious Happiness (RSP10763)
  11. 0.154 Whitey (RSP11363)
  12. 0.154 CPH (RSP11367)
  13. 0.160 Durban Poison 1 (RSP11013)
  14. 0.162 Liberty Haze (RSP11000)
  15. 0.168 Thank You Jerry (RSP11459)
  16. 0.171 Durban Poison 1 (RSP10996)
  17. 0.174 Charlotte Dream (RSP11412)
  18. 0.175 Lift (RSP11378)
  19. 0.176 Queen Dream (RSP11289)
  20. 0.177 Durban Poison (RSP11014)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.126 Blueberry Cheesecake (RSP10684)
  2. 0.172 Liberty Haze (RSP11000)
  3. 0.175 Durban Poison (RSP11014)
  4. 0.192 RKM-2018-032 (RSP11124)
  5. 0.202 Golden Goat 2 (RSP10991)
  6. 0.206 RKM-2018-033 (RSP11125)
  7. 0.211 Gold Cracker (RSP11048)
  8. 0.216 RKM-2018-020 (RSP11112)
  9. 0.217 Hermaphrodite Research Sample1 (RSP11049)
  10. 0.230 Cbot-2019-006 (RSP11134)
  11. 0.230 QUEEN JESUS (RSP10105)
  12. 0.235 RKM-2018-003 (RSP11094)
  13. 0.236 RKM-2018-028 (RSP11120)
  14. 0.237 UP Sunrise (RSP10989)
  15. 0.238 Cbot-2019-004 (RSP11132)
  16. 0.240 Pie Hoe (RSP11073)
  17. 0.241 RKM-2018-005 (RSP11096)
  18. 0.243 Skunk 18 (RSP11038)
  19. 0.245 Blueberry Cheesecake (RSP10680)
  20. 0.246 RKM-2018-009 (RSP11100)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.416 JL yellow (RSP11075)
  2. 0.395 Cherry Blossom (RSP11318)
  3. 0.394 80E (RSP11213)
  4. 0.390 Cherry Blossom (RSP11317)
  5. 0.385 JL 3rd Gen Mother (RSP11214)
  6. 0.377 Unknown- Cherry Wine - 001 (RSP11268)
  7. 0.376 Feral (RSP11205)
  8. 0.376 JL 3rd Gen Father (RSP11196)
  9. 0.372 Cherry Blossom (RSP11323)
  10. 0.370 80E (RSP11211)
  11. 0.370 Cherry Blossom (RSP11328)
  12. 0.368 Feral (RSP10892)
  13. 0.366 80E (RSP11212)
  14. 0.365 Carmagnola (RSP11037)
  15. 0.365 JL 3rd Gen Mother (RSP11197)
  16. 0.363 JL 4th Gen 2 (RSP11194)
  17. 0.362 CS (RSP11208)
  18. 0.362 JL 4th Gen 5 (RSP11199)
  19. 0.361 Feral (RSP11206)
  20. 0.359 USO31 (RSP10233)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.418 JL yellow (RSP11075)
  2. 0.383 Carmagnola (RSP11037)
  3. 0.363 Feral (RSP10890)
  4. 0.361 Monoica (RSP10241)
  5. 0.356 Ivory (RSP10668)
  6. 0.337 Futura 75 (RSP10664)
  7. 0.337 Lovrin (RSP10658)
  8. 0.336 Fedora 17 (RSP10661)
  9. 0.335 Cherry (RSP11142)
  10. 0.333 Santhica27 (RSP11047)
  11. 0.332 KYRG-11 (RSP11051)
  12. 0.324 Carmagnola (RSP10979)
  13. 0.320 USO 31 (RSP10981)
  14. 0.315 Kyrgyz Gold (RSP11054)
  15. 0.315 Tisza (RSP11044)
  16. 0.311 Skywalker OG (RSP10837)
  17. 0.304 Cbot-2019-005 (RSP11133)
  18. 0.303 RKM-2018-022 (RSP11114)
  19. 0.302 Sour Raspberry (RSP10551)
  20. 0.299 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346496
Overlapping SNPs:
46
Concordance:
34

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495215
Overlapping SNPs:
7
Concordance:
7

Blockchain Registration Information

Transaction ID
bfc5394e9cf8ac6716aa9ebe8eb78db3d6239d297de29e1a3433b06b9a7e5ea9
Stamping Certificate
Download PDF (39.8 KB)
SHASUM Hash
1464e21b7bd5c87b6bd97b06bded0a2be49b663223dafb482b365abbaaeb6699
QR code for RSP11466

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