JL_X_NSPM1_5

RSP 11467

Grower: Kevin McKernan

General Information

Accession Date
May 7, 2020
Reported Plant Sex
Male

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.91%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0822
male female RSP11467

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.781T>A p.Leu261Ile missense variant moderate contig700 1950857

IGV: Start, Jump

A/T
NGS:
0.007
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.95_97delGTT p.Cys32del disruptive inframe deletion moderate contig121 2835800

IGV: Start, Jump

ATGT/A
NGS:
0.118
C90:
0.311
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.159 Electra (RSP11366)
  2. 0.160 Domnesia (RSP11184)
  3. 0.166 Lift (RSP11378)
  4. 0.170 Blue Dream (RSP11004)
  5. 0.174 Whitey (RSP11363)
  6. 0.178 Joy (RSP11380)
  7. 0.183 Serious Happiness (RSP10763)
  8. 0.186 Super Blue Dream (RSP11011)
  9. 0.192 Doug s Varin (RSP11243)
  10. 0.202 Blue Dream (RSP11007)
  11. 0.204 NSPM1 (RSP11362)
  12. 0.207 Suver Haze (RSP11364)
  13. 0.209 JL 4th Gen 7 (RSP11153)
  14. 0.211 Blue Dream (RSP11008)
  15. 0.212 Blue Dream (RSP11006)
  16. 0.215 CBG- 40 (RSP11444)
  17. 0.219 Lifter (RSP11365)
  18. 0.220 SHERBERT (RSP11355)
  19. 0.221 Liberty Haze (RSP11000)
  20. 0.223 Blue Dream (RSP11009)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.222 Liberty Haze (RSP11000)
  2. 0.231 Blueberry Cheesecake (RSP10684)
  3. 0.236 Durban Poison (RSP11014)
  4. 0.250 CST (RSP11002)
  5. 0.256 Golden Goat 2 (RSP10991)
  6. 0.257 RKM-2018-005 (RSP11096)
  7. 0.262 UP Sunrise (RSP10989)
  8. 0.265 Blue Dream (RSP11033)
  9. 0.271 The Gift (RSP10988)
  10. 0.273 Kimbo Slice (RSP10997)
  11. 0.285 RKM-2018-029 (RSP11121)
  12. 0.287 Gold Cracker (RSP11048)
  13. 0.288 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.289 RKM-2018-033 (RSP11125)
  15. 0.291 Skywalker OG (RSP10837)
  16. 0.292 Hermaphrodite ResearchSample2 (RSP11050)
  17. 0.293 Sour Raspberry (RSP10551)
  18. 0.294 Pie Hoe (RSP11073)
  19. 0.299 RKM-2018-034 (RSP11126)
  20. 0.301 RKM-2018-032 (RSP11124)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.457 80E (RSP11213)
  2. 0.436 Cbot-2019-005 (RSP11133)
  3. 0.436 80E (RSP11211)
  4. 0.435 80E (RSP11212)
  5. 0.426 Arcata Trainwreck (RSP11176)
  6. 0.418 Carmagnola (RSP11202)
  7. 0.418 CS (RSP11208)
  8. 0.412 Feral (RSP11205)
  9. 0.409 Cherry Blossom (RSP11318)
  10. 0.405 Feral (RSP10891)
  11. 0.404 Carmaleonte (RSP11207)
  12. 0.402 Unknown- Cherry Wine - 001 (RSP11268)
  13. 0.402 Cherry Blossom (RSP11323)
  14. 0.401 Carmagnola (RSP11037)
  15. 0.400 RKM-2018-024 (RSP11116)
  16. 0.397 Northern Skunk (RSP11456)
  17. 0.395 USO31 (RSP10233)
  18. 0.395 Feral (RSP11206)
  19. 0.394 Cherry Blossom (RSP11274)
  20. 0.394 Danny Noonan (RSP11070)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.442 Cbot-2019-005 (RSP11133)
  2. 0.397 Carmagnola (RSP11037)
  3. 0.397 Santhica27 (RSP11047)
  4. 0.393 Kush Hemp E1 (RSP11128)
  5. 0.385 Feral (RSP10890)
  6. 0.384 Monoica (RSP10241)
  7. 0.372 Carmagnola (RSP10979)
  8. 0.369 Fedora 17 (RSP10661)
  9. 0.369 Futura 75 (RSP10664)
  10. 0.368 RKM-2018-019 (RSP11111)
  11. 0.366 RKM-2018-006 (RSP11097)
  12. 0.364 Ivory (RSP10668)
  13. 0.364 Black Beauty (RSP11035)
  14. 0.363 USO 31 (RSP10981)
  15. 0.360 KYRG-11 (RSP11051)
  16. 0.359 RKM-2018-018 (RSP11110)
  17. 0.357 Cbot-2019-004 (RSP11132)
  18. 0.355 RKM-2018-022 (RSP11114)
  19. 0.353 RKM-2018-028 (RSP11120)
  20. 0.349 Tisza (RSP11044)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448662
Overlapping SNPs:
65
Concordance:
41

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495163
Overlapping SNPs:
9
Concordance:
9

Blockchain Registration Information

Transaction ID
6a628c2e26232e95118ae7ef2395adc34fe6f375da6e9993265a827217415fff
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
53f69e13423caa8de0b151866cd3b88b6028221cd38231f083169f9a0dab1908
QR code for RSP11467

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