JL_X_NSPM1_12

RSP 11472

Grower: Kevin McKernan

General Information

Accession Date
May 7, 2020
Reported Plant Sex
Male

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.8%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0877
male female RSP11472

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.80A>G p.Lys27Arg missense variant moderate contig121 2828736

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
aPT1

UniProt

c.864C>G p.Asn288Lys missense variant moderate contig121 2842407

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.062
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.193 UP Sunrise (RSP10989)
  2. 0.198 Electra (RSP11366)
  3. 0.201 Doug s Varin (RSP11243)
  4. 0.206 Jacks Cleaner (RSP11347)
  5. 0.208 JL X NSPM1 8 (RSP11470)
  6. 0.208 Blue Dream (RSP11004)
  7. 0.210 Calm (RSP11379)
  8. 0.212 Blue Dream (RSP11010)
  9. 0.216 Blue Dream (RSP11009)
  10. 0.216 RKM-2018-011 (RSP11102)
  11. 0.217 Blue Dream (RSP11006)
  12. 0.218 JL 3rd Gen Mother (RSP11197)
  13. 0.218 JL 4th Gen 7 (RSP11153)
  14. 0.219 Lift (RSP11378)
  15. 0.219 Serious Happiness (RSP10763)
  16. 0.222 Black Jack (RSP10603)
  17. 0.223 Suver Haze (RSP11364)
  18. 0.223 Tangerine Haze (RSP10995)
  19. 0.224 Blue Dream (RSP11017)
  20. 0.226 RKM-2018-016 (RSP11108)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.199 UP Sunrise (RSP10989)
  2. 0.230 JL yellow (RSP11075)
  3. 0.236 Liberty Haze (RSP11000)
  4. 0.245 Durban Poison (RSP11014)
  5. 0.251 Blue Dream (RSP11033)
  6. 0.252 Italian Kiss (RSP11034)
  7. 0.258 RKM-2018-006 (RSP11097)
  8. 0.263 RKM-2018-027 (RSP11119)
  9. 0.271 RKM-2018-031 (RSP11123)
  10. 0.279 Gold Cracker (RSP11048)
  11. 0.280 Cbot-2019-001 (RSP11129)
  12. 0.282 CST (RSP11002)
  13. 0.282 QUEEN JESUS (RSP10105)
  14. 0.286 RKM-2018-003 (RSP11094)
  15. 0.286 Blueberry Cheesecake (RSP10684)
  16. 0.287 RKM-2018-020 (RSP11112)
  17. 0.299 RKM-2018-018 (RSP11110)
  18. 0.300 RKM-2018-023 (RSP11115)
  19. 0.308 RKM-2018-009 (RSP11100)
  20. 0.309 Tygra (RSP10667)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.480 Red Eye OG (RSP11190)
  2. 0.454 80E (RSP11213)
  3. 0.446 RKM-2018-012 (RSP11103)
  4. 0.445 80E (RSP11211)
  5. 0.444 Star Dawg (RSP11352)
  6. 0.442 Feral (RSP11205)
  7. 0.433 80E (RSP11212)
  8. 0.431 Rugburn OG (RSP11353)
  9. 0.430 RKM-2018-002 (RSP11093)
  10. 0.430 Garlic (RSP11341)
  11. 0.425 Skywalker OG (RSP10837)
  12. 0.425 Chem 91 (RSP11185)
  13. 0.424 Super Sour Diesel (RSP11191)
  14. 0.423 Cherry Blossom (RSP11311)
  15. 0.421 RKM-2018-026 (RSP11118)
  16. 0.421 SFVxTK (RSP11072)
  17. 0.420 Kush Hemp E1 (RSP11128)
  18. 0.412 RKM-2018-013 (RSP11104)
  19. 0.409 501st OG (RSP11241)
  20. 0.407 CS (RSP11208)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.438 Kush Hemp E1 (RSP11128)
  2. 0.436 Skywalker OG (RSP10837)
  3. 0.435 RKM-2018-002 (RSP11093)
  4. 0.426 RKM-2018-026 (RSP11118)
  5. 0.413 Cbot-2019-005 (RSP11133)
  6. 0.398 RKM-2018-034 (RSP11126)
  7. 0.391 Feral (RSP10890)
  8. 0.382 Monoica (RSP10241)
  9. 0.379 Santhica27 (RSP11047)
  10. 0.378 Pie Hoe (RSP11073)
  11. 0.378 RKM-2018-032 (RSP11124)
  12. 0.377 The Gift (RSP10988)
  13. 0.374 Cherry (RSP11142)
  14. 0.371 RKM-2018-022 (RSP11114)
  15. 0.370 Futura 75 (RSP10664)
  16. 0.366 Kyrgyz Gold (RSP11054)
  17. 0.365 Fedora 17 (RSP10661)
  18. 0.361 RKM-2018-005 (RSP11096)
  19. 0.360 RKM-2018-019 (RSP11111)
  20. 0.360 Ivory (RSP10668)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346639
Overlapping SNPs:
64
Concordance:
43

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
7ec579fe7c4900af86407e12c22413c5eaa09343d8e43cae328607aff38dc95a
Stamping Certificate
Download PDF (39.9 KB)
SHASUM Hash
b43ec9f25d024828c7236bb9fe6e7bf439a521b1849c3ebb85f11aeb774f2167
QR code for RSP11472

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