Tanao Sri (46)

RSP 11486

Grower: RUMTI.SKC

General Information

Sample Name
CS Indica
Accession Date
May 21, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.94%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0414
male female RSP11486

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
GPPs1

UniProt

c.896A>G p.Asn299Ser missense variant moderate contig676 169772

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.000
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1945223

IGV: Start, Jump

G/C
NGS:
0.075
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.592A>G p.Asn198Asp missense variant moderate contig700 1951046

IGV: Start, Jump

T/C
NGS:
0.048
C90:
0.000
PKSG-2b

UniProt

c.560C>T p.Thr187Met missense variant moderate contig700 1951078

IGV: Start, Jump

G/A
NGS:
0.050
C90:
0.000
PKSG-2b

UniProt

c.558G>A p.Met186Ile missense variant moderate contig700 1951080

IGV: Start, Jump

C/T
NGS:
0.050
C90:
0.000
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.439T>A p.Ser147Thr missense variant moderate contig121 2830634

IGV: Start, Jump

T/A
NGS:
0.015
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.220A>G p.Ile74Val missense variant moderate contig121 2835927

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.019
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.238 Squirrel Tail 31 (RSP11485)
  2. 0.256 Tiger Tail 30 (RSP11484)
  3. 0.302 JL X NSPM1 12 (RSP11472)
  4. 0.311 North Traveler (RSP11168)
  5. 0.312 KYRG-11 (RSP11051)
  6. 0.312 Cbot-2019-001 (RSP11129)
  7. 0.314 Gelato OG (RSP11457)
  8. 0.315 Liberty Haze (RSP11000)
  9. 0.317 JL X NSPM1 8 (RSP11470)
  10. 0.317 Calm (RSP11379)
  11. 0.317 Jacks Cleaner (RSP11347)
  12. 0.319 UP Sunrise (RSP10989)
  13. 0.320 Alaska (RSP10939)
  14. 0.323 Blue Dream (RSP11007)
  15. 0.325 Tangerine Haze (RSP10995)
  16. 0.328 Jiangji (RSP10653)
  17. 0.328 RKM-2018-011 (RSP11102)
  18. 0.328 Tisza (RSP10659)
  19. 0.329 Blue Dream (RSP11009)
  20. 0.330 Super Blue Dream (RSP11011)

Nearest genetic relatives (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.310 UP Sunrise (RSP10989)
  2. 0.328 Cbot-2019-001 (RSP11129)
  3. 0.342 Jiangji (RSP10653)
  4. 0.342 RKM-2018-006 (RSP11097)
  5. 0.343 Liberty Haze (RSP11000)
  6. 0.345 KYRG-11 (RSP11051)
  7. 0.345 Tisza (RSP10659)
  8. 0.348 Monoica (RSP10241)
  9. 0.350 RKM-2018-031 (RSP11123)
  10. 0.351 Carmagnola (RSP11037)
  11. 0.352 Tisza (RSP11044)
  12. 0.356 RKM-2018-018 (RSP11110)
  13. 0.357 Italian Kiss (RSP11034)
  14. 0.359 Blue Dream (RSP11033)
  15. 0.361 Cbot-2019-004 (RSP11132)
  16. 0.362 JL yellow (RSP11075)
  17. 0.363 Futura 75 (RSP10664)
  18. 0.364 Feral (RSP10890)
  19. 0.366 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.369 Lovrin (RSP10658)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.496 Red Eye OG (RSP11190)
  2. 0.481 RKM-2018-012 (RSP11103)
  3. 0.476 Cherry Blossom (RSP11311)
  4. 0.472 Garlic (RSP11341)
  5. 0.468 Cherry Blossom (RSP11333)
  6. 0.466 Skywalker OG (RSP10837)
  7. 0.465 RKM-2018-022 (RSP11114)
  8. 0.462 Cherry Blossom (RSP11335)
  9. 0.462 Star Dawg (RSP11352)
  10. 0.462 Cherry Blossom (RSP11308)
  11. 0.459 Kush Hemp E1 (RSP11128)
  12. 0.459 Cherry Blossom (RSP11314)
  13. 0.459 Square Wave (RSP11344)
  14. 0.459 SFVxTK (RSP11072)
  15. 0.458 Northern Skunk (RSP11456)
  16. 0.457 RKM-2018-013 (RSP11104)
  17. 0.456 Deadhead OG (RSP11463)
  18. 0.456 NSPM x NSPM (RSP11487)
  19. 0.455 MENDO BREATH (RSP11242)
  20. 0.455 Rugburn OG (RSP11353)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.478 Skywalker OG (RSP10837)
  2. 0.475 Kush Hemp E1 (RSP11128)
  3. 0.470 RKM-2018-026 (RSP11118)
  4. 0.464 RKM-2018-022 (RSP11114)
  5. 0.460 Pie Hoe (RSP11073)
  6. 0.457 RKM-2018-034 (RSP11126)
  7. 0.453 Cbot-2019-005 (RSP11133)
  8. 0.451 RKM-2018-019 (RSP11111)
  9. 0.445 RKM-2018-002 (RSP11093)
  10. 0.425 Cherry (RSP11142)
  11. 0.422 RKM-2018-005 (RSP11096)
  12. 0.418 RKM-2018-032 (RSP11124)
  13. 0.416 The Gift (RSP10988)
  14. 0.411 Ivory (RSP10668)
  15. 0.409 RKM-2018-020 (RSP11112)
  16. 0.407 Hermaphrodite ResearchSample2 (RSP11050)
  17. 0.401 RKM-2018-033 (RSP11125)
  18. 0.400 Skunk 18 (RSP11038)
  19. 0.399 Blueberry Cheesecake (RSP10680)
  20. 0.396 Golden Goat 2 (RSP10991)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
8
Concordance:
7

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495161
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
3290b815115752f10ddbf36dd599641386b3f9fbe200dfe8c1b13581ee834fc0
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
0d10955d159087b34d2a3b5972415bd6de60904b3346475a495cd77016aa5ba9
QR code for RSP11486

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