NSPM_x_NSPM
RSP 11487
Grower: Kevin Mckernan
General Information
- Sample Name
- Tent_Outdoor
- Accession Date
- May 21, 2020
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.781T>A | p.Leu261Ile | missense variant | moderate | contig700 | 1944609 | A/T | |
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1945202 | A/C |
|
PKSG-2a | c.188T>A | p.Ile63Asn | missense variant | moderate | contig700 | 1945202 | A/T |
|
PKSG-2a | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1945203 | T/A |
|
PKSG-2a | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1945223 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1951450 | A/C |
|
PKSG-2b | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1951451 | T/A |
|
PKSG-2b | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1951471 | G/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.527G>T | p.Trp176Leu | missense variant | moderate | contig700 | 2721146 | C/A |
|
PKSG-4b | c.526T>C | p.Trp176Arg | missense variant | moderate | contig700 | 2721147 | A/G |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
Nearest genetic relatives (All Samples)
- 0.162 NSPM1 (RSP11362)
- 0.171 Garlic (RSP11341)
- 0.177 Domnesia (RSP11184)
- 0.192 Gorilla Cookies (RSP11231)
- 0.194 SHERBERT (RSP11355)
- 0.198 JL Tent 2 (RSP11489)
- 0.202 JL X NSPM1 14 (RSP11473)
- 0.205 Serious Happiness (RSP10763)
- 0.206 JL Tent 3 (RSP11490)
- 0.213 Casco Kush (RSP11167)
- 0.213 JL X NSPM1 22 (RSP11475)
- 0.213 JL x NSPM1 1 (RSP11478)
- 0.214 Star Dawg (RSP11352)
- 0.215 JL Tent 1 yellow stake (RSP11488)
- 0.216 RKM-2018-034 (RSP11126)
- 0.217 Super Blue Dream (RSP11011)
- 0.218 Electra (RSP11366)
- 0.218 SFVxTK (RSP11072)
- 0.219 Blue Dream (RSP11017)
- 0.220 Dominion Skunk (RSP11354)
Nearest genetic relatives (Base Tree)
- 0.216 RKM-2018-034 (RSP11126)
- 0.225 Skywalker OG (RSP10837)
- 0.235 Blueberry Cheesecake (RSP10684)
- 0.242 Hermaphrodite ResearchSample2 (RSP11050)
- 0.249 The Gift (RSP10988)
- 0.253 Pie Hoe (RSP11073)
- 0.255 RKM-2018-026 (RSP11118)
- 0.261 RKM-2018-032 (RSP11124)
- 0.268 RKM-2018-033 (RSP11125)
- 0.268 RKM-2018-009 (RSP11100)
- 0.277 Gold Cracker (RSP11048)
- 0.277 Durban Poison (RSP11014)
- 0.278 Liberty Haze (RSP11000)
- 0.280 Recon (RSP10755)
- 0.282 Hermaphrodite Research Sample1 (RSP11049)
- 0.286 Golden Goat 2 (RSP10991)
- 0.287 RKM-2018-005 (RSP11096)
- 0.287 Blueberry Cheesecake (RSP10680)
- 0.289 Blue Dream (RSP11033)
- 0.290 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.484 Cherry Blossom (RSP11323)
- 0.475 Cherry Blossom (RSP11318)
- 0.456 Tanao Sri 46 (RSP11486)
- 0.441 Unknown- Cherry Wine - 001 (RSP11268)
- 0.441 AVIDEKEL 2 0 (RSP11174)
- 0.440 Cherry Blossom (RSP11328)
- 0.435 Cherry Blossom (RSP11325)
- 0.433 Cherry Blossom (RSP11306)
- 0.419 Cherry Blossom (RSP11301)
- 0.415 Brunswick High (RSP11164)
- 0.413 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.411 Unknown- Cherry Wine - 003 (RSP11270)
- 0.411 80E (RSP11213)
- 0.410 Cherry Blossom (RSP11274)
- 0.410 Unknown- Cherry Wine - 002 (RSP11269)
- 0.410 Cherry Blossom (RSP11312)
- 0.410 JL yellow (RSP11075)
- 0.408 Cherry Blossom (RSP11300)
- 0.407 Cherry Blossom (RSP11309)
- 0.405 JL 2 (RSP11076)
Most genetically distant strains (Base Tree)
- 0.426 JL yellow (RSP11075)
- 0.400 Carmagnola (RSP11037)
- 0.389 Carmagnola (RSP10979)
- 0.388 Cbot-2019-001 (RSP11129)
- 0.387 Santhica27 (RSP11047)
- 0.384 Cherry (RSP11143)
- 0.384 Monoica (RSP10241)
- 0.379 Futura 75 (RSP10664)
- 0.378 Feral (RSP10890)
- 0.377 Cbot-2019-005 (RSP11133)
- 0.375 RKM-2018-018 (RSP11110)
- 0.374 Ivory (RSP10668)
- 0.374 Blueberry Cheesecake (RSP10672)
- 0.373 RKM-2018-028 (RSP11120)
- 0.368 Tisza (RSP11044)
- 0.367 USO 31 (RSP10981)
- 0.367 Fedora 17 (RSP10661)
- 0.365 Lovrin (RSP10658)
- 0.363 Black Beauty (RSP11035)
- 0.359 Cbot-2019-004 (RSP11132)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 83
- Concordance:
- 54
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- Transaction ID
-
21852e3155c8d4b7
6540f316512fc41b 5d427bda0d31c546 336a2eec002cfd6f - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
0536735a84c97589
0c90f520586e62d4 be73d426a5891a94 35dbdbbd53e703e8