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RSP 11493

Grower: Kevin Mckernan

General Information

Accession Date
May 21, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.09%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0463
male female RSP11493

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>T p.Lys162Met missense variant moderate contig700 2721188

IGV: Start, Jump

T/A
NGS:
0.007
C90:
0.000
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.183 Candy Kush (RSP11492)
  2. 0.234 Liberty Haze (RSP11000)
  3. 0.249 Cherry Fog XL (RSP11458)
  4. 0.251 Electra (RSP11366)
  5. 0.253 Liberty Haze (RSP10946)
  6. 0.257 Lift (RSP11378)
  7. 0.269 Doug s Varin (RSP11243)
  8. 0.272 Suver Haze (RSP11364)
  9. 0.275 FL30 (RSP11361)
  10. 0.276 Joy (RSP11380)
  11. 0.277 Gold Cracker (RSP11041)
  12. 0.277 Blue Dream (RSP11017)
  13. 0.278 Domnesia (RSP11184)
  14. 0.279 Lifter (RSP11365)
  15. 0.280 Durban Poison 1 (RSP10996)
  16. 0.282 Trump x Trump (RSP11466)
  17. 0.282 White Label 2 (RSP11337)
  18. 0.283 UP All Day Jay (RSP11258)
  19. 0.284 Miss X (RSP10999)
  20. 0.284 Black Jack (RSP10603)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.242 Liberty Haze (RSP11000)
  2. 0.284 Gold Cracker (RSP11048)
  3. 0.295 UP Sunrise (RSP10989)
  4. 0.298 RKM-2018-031 (RSP11123)
  5. 0.299 QUEEN JESUS (RSP10105)
  6. 0.303 Tygra (RSP10667)
  7. 0.304 Blueberry Cheesecake (RSP10684)
  8. 0.310 Tisza (RSP10659)
  9. 0.314 Cherry (RSP11143)
  10. 0.315 Cbot-2019-006 (RSP11134)
  11. 0.318 Italian Kiss (RSP11034)
  12. 0.320 Blue Dream (RSP11033)
  13. 0.323 Durban Poison (RSP11014)
  14. 0.325 RKM-2018-023 (RSP11115)
  15. 0.326 RKM-2018-028 (RSP11120)
  16. 0.328 RKM-2018-029 (RSP11121)
  17. 0.328 Recon (RSP10755)
  18. 0.329 RKM-2018-009 (RSP11100)
  19. 0.330 USO 31 (RSP10981)
  20. 0.332 RKM-2018-027 (RSP11119)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.446 RKM-2018-012 (RSP11103)
  2. 0.437 Red Eye OG (RSP11190)
  3. 0.431 RKM-2018-026 (RSP11118)
  4. 0.424 Star Dawg (RSP11352)
  5. 0.424 SFVxTK (RSP11072)
  6. 0.424 Chem 91 (RSP11185)
  7. 0.420 Skywalker OG (RSP10837)
  8. 0.415 RKM-2018-002 (RSP11093)
  9. 0.415 Cherry Blossom (RSP11323)
  10. 0.411 Cherry Blossom (RSP11317)
  11. 0.411 Gorilla Cookies (RSP11231)
  12. 0.410 JL yellow (RSP11075)
  13. 0.405 Abacus (RSP11266)
  14. 0.404 RKM-2018-034 (RSP11126)
  15. 0.403 Deadhead OG (RSP11463)
  16. 0.402 Northern Lights (RSP11501)
  17. 0.401 Tiger Tail 30 (RSP11484)
  18. 0.400 YMCM (RSP11416)
  19. 0.400 JL 3rd Gen Mother (RSP11214)
  20. 0.399 Garlic (RSP11341)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.432 Skywalker OG (RSP10837)
  2. 0.430 RKM-2018-026 (RSP11118)
  3. 0.417 RKM-2018-002 (RSP11093)
  4. 0.416 RKM-2018-034 (RSP11126)
  5. 0.392 Cherry (RSP11142)
  6. 0.390 Kush Hemp E1 (RSP11128)
  7. 0.386 Cbot-2019-005 (RSP11133)
  8. 0.385 JL yellow (RSP11075)
  9. 0.380 Sour Raspberry (RSP10551)
  10. 0.377 Hermaphrodite Research Sample1 (RSP11049)
  11. 0.375 RKM-2018-005 (RSP11096)
  12. 0.375 Cbot-2019-004 (RSP11132)
  13. 0.374 RKM-2018-018 (RSP11110)
  14. 0.373 Feral (RSP10890)
  15. 0.368 Carmagnola (RSP11037)
  16. 0.368 RKM-2018-006 (RSP11097)
  17. 0.367 Pie Hoe (RSP11073)
  18. 0.365 RKM-2018-022 (RSP11114)
  19. 0.361 RKM-2018-033 (RSP11125)
  20. 0.357 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346956
Overlapping SNPs:
88
Concordance:
55

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
cf3d7b6099af28010f0baea6933dfd590570e4f6b5b4573c92a1eec47b1095e3
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
cc08d86ae5f6b63edc67e99b0ebded31d47d1308b6b52d6764b84095d50f80e2
QR code for RSP11493

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