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RSP 11493

Grower: Kevin Mckernan

General Information

Accession Date
May 21, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.09%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0463
male female RSP11493

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>T p.Lys162Met missense variant moderate contig700 2721188

IGV: Start, Jump

T/A
NGS:
0.007
C90:
0.000
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.190 Candy Kush (RSP11492)
  2. 0.243 Liberty Haze (RSP11000)
  3. 0.251 Cherry Fog XL (RSP11458)
  4. 0.258 Blue Dream (RSP11017)
  5. 0.259 Electra (RSP11366)
  6. 0.261 Liberty Haze (RSP10946)
  7. 0.264 Suver Haze (RSP11364)
  8. 0.265 Lift (RSP11378)
  9. 0.265 Doug s Varin (RSP11243)
  10. 0.269 FL30 7 11 2019 (RSP11361)
  11. 0.273 Tygra (RSP10667)
  12. 0.274 Badger (RSP11614)
  13. 0.277 Blueberry Cheesecake (RSP10684)
  14. 0.279 UP Sunrise (RSP10989)
  15. 0.281 Domnesia (RSP11184)
  16. 0.282 Northern Light (SRR14708265)
  17. 0.283 Durban Poison #1 (RSP10996)
  18. 0.284 Gold Cracker (RSP11041)
  19. 0.284 Super Lemon Haze (RSP11641)
  20. 0.284 Citradelic Sunset (RSP11975)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.249 Liberty Haze (RSP11000)
  2. 0.285 UP Sunrise (RSP10989)
  3. 0.291 Queen Jesus (RSP10105)
  4. 0.296 Gold Cracker (RSP11048)
  5. 0.301 Blueberry Cheesecake (RSP10684)
  6. 0.307 RKM-2018-031 (RSP11123)
  7. 0.309 Cherry (RSP11143)
  8. 0.310 Durban Poison (RSP11014)
  9. 0.311 Tygra (RSP10667)
  10. 0.317 Cbot-2019-006 (RSP11134)
  11. 0.320 Tisza (RSP10659)
  12. 0.320 Blue Dream (RSP11033)
  13. 0.325 RKM-2018-023 (RSP11115)
  14. 0.326 KYRG-11 (RSP11051)
  15. 0.328 RKM-2018-029 (RSP11121)
  16. 0.329 Recon (RSP10755)
  17. 0.333 Italian Kiss (RSP11034)
  18. 0.334 RKM-2018-003 (RSP11094)
  19. 0.336 RKM-2018-027 (RSP11119)
  20. 0.336 Carmagnola (RSP10979)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.460 BagSeed (RSP12627)
  2. 0.451 BagSeed (RSP12501)
  3. 0.449 Fatso (RSP11741)
  4. 0.444 Right Mark (RSP11628)
  5. 0.443 RKM-2018-012 (RSP11103)
  6. 0.438 Chem 91 (RSP11185)
  7. 0.433 Peanut Butter Breath (RSP11640)
  8. 0.431 RKM-2018-026 (RSP11118)
  9. 0.431 RKM-2018-002 (RSP11093)
  10. 0.429 Star Dawg (RSP11352)
  11. 0.428 Red Eye OG (RSP11190)
  12. 0.426 GMO x Zkittlez #43 (RSP11976)
  13. 0.423 Absolute OG (RSP11455)
  14. 0.421 CHEM4 (RSP12090)
  15. 0.420 Cherry Blossom (RSP11323)
  16. 0.418 CS Indica (RSP11658)
  17. 0.417 Gorilla Cookies (RSP11231)
  18. 0.416 JL Cross 14 (RSP11515)
  19. 0.416 Juicy Gummy x Royal Kush (RSP12484)
  20. 0.415 Skywalker OG (RSP10837)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.441 RKM-2018-026 (RSP11118)
  2. 0.430 Skywalker OG (RSP10837)
  3. 0.415 RKM-2018-002 (RSP11093)
  4. 0.415 RKM-2018-034 (RSP11126)
  5. 0.396 JL yellow (RSP11075)
  6. 0.395 Kush Hemp E1 (RSP11128)
  7. 0.390 Cherry (RSP11142)
  8. 0.386 Hermaphrodite Research Sample1 (RSP11049)
  9. 0.380 Sour Raspberry (RSP10551)
  10. 0.380 Cbot-2019-004 (RSP11132)
  11. 0.379 RKM-2018-022 (RSP11114)
  12. 0.377 Cbot-2019-005 (RSP11133)
  13. 0.376 RKM-2018-006 (RSP11097)
  14. 0.373 Pie Hoe (RSP11073)
  15. 0.370 Hermaphrodite ResearchSample2 (RSP11050)
  16. 0.370 RKM-2018-033 (RSP11125)
  17. 0.370 RKM-2018-004 (RSP11096)
  18. 0.368 The Gift (RSP10988)
  19. 0.367 RKM-2018-018 (RSP11110)
  20. 0.366 Feral (RSP10890)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346956
Overlapping SNPs:
88
Concordance:
55

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
cf3d7b6099af28010f0baea6933dfd590570e4f6b5b4573c92a1eec47b1095e3
Stamping Certificate
Download PDF (39.7 KB)
SHASUM Hash
cc08d86ae5f6b63edc67e99b0ebded31d47d1308b6b52d6764b84095d50f80e2
QR code for RSP11493

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