Advanced Strain Search

JL Cross 13

RSP 11514

Grower: Kevin McKernan

General Information

Accession Date
June 17, 2020
Reported Plant Sex
unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.05%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0475
male female RSP11514

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.175 Super Blue Dream (RSP11011)
  2. 0.178 Blue Dream (RSP11017)
  3. 0.178 UP Sunrise (RSP10989)
  4. 0.184 Blue Dream (RSP11010)
  5. 0.184 Blue Dream (RSP11007)
  6. 0.186 Blue Dream (RSP11009)
  7. 0.187 Blue Dream (RSP11008)
  8. 0.188 RKM-2018-009 (RSP11100)
  9. 0.197 Blue Dream (RSP11006)
  10. 0.197 BLACK JACK (RSP11346)
  11. 0.199 PWE (RSP11369)
  12. 0.200 Serious Happiness (RSP10763)
  13. 0.200 Liberty Haze (RSP11000)
  14. 0.204 Blue Dream (RSP11004)
  15. 0.205 Blue Dream (RSP11342)
  16. 0.208 Snoops Dream (RSP11003)
  17. 0.208 Snoops Dream (RSP11031)
  18. 0.209 UP Sunset (RSP11256)
  19. 0.212 Blue Dream (RSP11012)
  20. 0.212 Queen Dream CBG (RSP11285)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.170 UP Sunrise (RSP10989)
  2. 0.185 RKM-2018-009 (RSP11100)
  3. 0.211 Liberty Haze (RSP11000)
  4. 0.216 Blue Dream (RSP11033)
  5. 0.216 Hermaphrodite Research Sample1 (RSP11049)
  6. 0.237 Gold Cracker (RSP11048)
  7. 0.241 RKM-2018-033 (RSP11125)
  8. 0.244 Blueberry Cheesecake (RSP10684)
  9. 0.251 Italian Kiss (RSP11034)
  10. 0.251 RKM-2018-028 (RSP11120)
  11. 0.263 Sour Raspberry (RSP10551)
  12. 0.264 Blueberry Cheesecake (RSP10680)
  13. 0.265 RKM-2018-027 (RSP11119)
  14. 0.267 RKM-2018-018 (RSP11110)
  15. 0.267 RKM-2018-032 (RSP11124)
  16. 0.271 RKM-2018-031 (RSP11123)
  17. 0.277 RKM-2018-005 (RSP11096)
  18. 0.287 Cbot-2019-001 (RSP11129)
  19. 0.292 Golden Goat 2 (RSP10991)
  20. 0.294 Durban Poison (RSP11014)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.452 Cherry Blossom (RSP11314)
  2. 0.449 JL 3rd Gen Father (RSP11196)
  3. 0.445 Cherry Blossom (RSP11311)
  4. 0.444 JL yellow (RSP11075)
  5. 0.442 Cherry Blossom (RSP11317)
  6. 0.436 Cherry Blossom (RSP11328)
  7. 0.432 Cherry Blossom (RSP11333)
  8. 0.425 JL 3rd Gen Mother (RSP11214)
  9. 0.423 JL 4th Gen 5 (RSP11199)
  10. 0.422 JL 4th Gen 1 (RSP11193)
  11. 0.422 Feral (RSP11205)
  12. 0.421 Cherry Blossom (RSP11334)
  13. 0.421 Cherry Blossom (RSP11309)
  14. 0.420 Torrey (RSP11449)
  15. 0.413 Cherry Blossom (RSP11324)
  16. 0.412 Cherry Blossom (RSP11298)
  17. 0.412 Feral (RSP10892)
  18. 0.411 CS (RSP11208)
  19. 0.411 Feral (RSP10891)
  20. 0.411 JL 4th Gen 2 (RSP11194)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.429 JL yellow (RSP11075)
  2. 0.422 Cbot-2019-005 (RSP11133)
  3. 0.422 Feral (RSP10890)
  4. 0.413 Cherry (RSP11142)
  5. 0.404 Futura 75 (RSP10664)
  6. 0.404 Kush Hemp E1 (RSP11128)
  7. 0.396 Monoica (RSP10241)
  8. 0.396 Carmagnola (RSP10979)
  9. 0.394 Fedora 17 (RSP10661)
  10. 0.394 KYRG-11 (RSP11051)
  11. 0.392 Carmagnola (RSP11037)
  12. 0.391 Kyrgyz Gold (RSP11054)
  13. 0.390 Ivory (RSP10668)
  14. 0.389 RKM-2018-022 (RSP11114)
  15. 0.388 Santhica27 (RSP11047)
  16. 0.387 Lovrin (RSP10658)
  17. 0.384 USO 31 (RSP10981)
  18. 0.375 Jiangji (RSP10653)
  19. 0.374 Tisza (RSP11044)
  20. 0.360 Tisza (RSP10659)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346844
Overlapping SNPs:
67
Concordance:
49

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495196
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

SHASUM Hash
fd34c3dfb6c968ed3dca8fac9e22d96ab2b489ef39d734350a3ec7a4207abacd
QR code for RSP11514

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