JL Cross 13
RSP 11514
Grower: Kevin McKernan
General Information
- Accession Date
- June 17, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.171 Blue Dream (RSP11017)
- 0.174 Blue Dream (RSP11004)
- 0.177 Blue Dream (RSP11009)
- 0.177 Blue Dream (RSP11010)
- 0.181 Blue Dream (RSP11007)
- 0.182 RKM-2018-009 (RSP11100)
- 0.184 UP Sunrise (RSP10989)
- 0.184 Blue Dream (RSP11006)
- 0.188 Blue Dream (RSP11008)
- 0.188 Super Blue Dream (RSP11011)
- 0.198 Blue Dream (RSP11342)
- 0.199 Lime OG (RSP12101)
- 0.201 Hermaphrodite Research Sample1 (RSP11042)
- 0.201 Queen Dream CBG (RSP11285)
- 0.202 PWE (RSP11369)
- 0.204 Liberty Haze (RSP11000)
- 0.204 Serious Happiness (RSP10763)
- 0.204 Electra (RSP11366)
- 0.204 BLACK JACK (RSP11346)
- 0.206 Blue Dream (RSP11012)
Nearest genetic relatives (Base Tree)
- 0.179 UP Sunrise (RSP10989)
- 0.182 RKM-2018-009 (RSP11100)
- 0.217 Hermaphrodite Research Sample1 (RSP11049)
- 0.219 Liberty Haze (RSP11000)
- 0.221 Blue Dream (RSP11033)
- 0.237 RKM-2018-033 (RSP11125)
- 0.237 Blueberry Cheesecake (RSP10684)
- 0.249 Gold Cracker (RSP11048)
- 0.250 Sour Raspberry (RSP10551)
- 0.256 RKM-2018-028 (RSP11120)
- 0.257 Italian Kiss (RSP11034)
- 0.263 RKM-2018-031 (RSP11123)
- 0.266 RKM-2018-018 (RSP11110)
- 0.268 RKM-2018-004 (RSP11096)
- 0.270 Blueberry Cheesecake (RSP10680)
- 0.271 RKM-2018-032 (RSP11124)
- 0.274 RKM-2018-027 (RSP11119)
- 0.277 Cbot-2019-001 (RSP11129)
- 0.285 Durban Poison (RSP11014)
- 0.295 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.453 Cherry Blossom (RSP11311)
- 0.451 Cherry Blossom (RSP11314)
- 0.448 JL 3rd Gen Father (RSP11196)
- 0.447 Cherry Blossom (RSP11317)
- 0.432 BagSeed (RSP12627)
- 0.431 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
- 0.430 Cherry Blossom (RSP11328)
- 0.429 R1in136 (SRR14708226)
- 0.429 Ruderalis Indica (SRR14708267)
- 0.428 Feral (RSP11205)
- 0.425 Cherry Blossom (RSP11333)
- 0.423 Cherry Blossom (RSP11309)
- 0.422 Beniko (SRR14708275)
- 0.422 BagSeed (RSP12501)
- 0.421 Torrey (RSP11449)
- 0.421 IUP2 (SRR14708257)
- 0.421 JL 4th Gen 5 (RSP11199)
- 0.418 XUM2 (SRR14708204)
- 0.418 Feral (RSP10892)
- 0.418 JL yellow (RSP11075)
Most genetically distant strains (Base Tree)
- 0.421 Cbot-2019-005 (RSP11133)
- 0.417 JL yellow (RSP11075)
- 0.417 Futura 75 (RSP10664)
- 0.417 Feral (RSP10890)
- 0.413 Cherry (RSP11142)
- 0.404 USO 31 (RSP10981)
- 0.399 Santhica27 (RSP11047)
- 0.398 Carmagnola (RSP11037)
- 0.397 Kush Hemp E1 (RSP11128)
- 0.397 Monoica (RSP10241)
- 0.396 Ivory (RSP10668)
- 0.393 RKM-2018-022 (RSP11114)
- 0.393 Lovrin (RSP10658)
- 0.391 Fedora 17 (RSP10661)
- 0.390 KYRG-11 (RSP11051)
- 0.389 Carmagnola (RSP10979)
- 0.380 Kyrgyz Gold (RSP11054)
- 0.375 Tisza (RSP11044)
- 0.370 Jiangji (RSP10653)
- 0.368 RKM-2018-034 (RSP11126)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 67
- Concordance:
- 49
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- SHASUM Hash
-
fd34c3dfb6c968ed
3dca8fac9e22d96a b2b489ef39d73435 0a3ec7a4207abacd