Badger
RSP 11614
General Information
- Sample Name
- Badger 062220
- Accession Date
- July 6, 2020
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.556A>G | p.Arg186Gly | missense variant & splice region variant | moderate | contig700 | 2721117 | T/C |
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
Nearest genetic relatives (All Samples)
- 0.085 Electra (RSP11366)
- 0.119 Doug s Varin (RSP11243)
- 0.123 Lift (RSP11378)
- 0.127 Suver Haze (RSP11364)
- 0.128 Serious Happiness (RSP10763)
- 0.133 Joy (RSP11380)
- 0.148 Domnesia (RSP11184)
- 0.156 FL30 (RSP11361)
- 0.159 JL X NSPM1 14 (RSP11473)
- 0.160 Blue Dream (RSP11017)
- 0.161 RINGO S ANGEL (RSP10085)
- 0.165 Blue Dream (RSP11004)
- 0.166 Blue Dream (RSP11010)
- 0.170 Blueberry Cheesecake (RSP10684)
- 0.173 Blue Dream (RSP11007)
- 0.173 Trump x Trump (RSP11466)
- 0.174 Cherry Blossom (RSP11320)
- 0.176 Rest (RSP11377)
- 0.178 Super Blue Dream (RSP11011)
- 0.180 Lifter (RSP11365)
Nearest genetic relatives (Base Tree)
- 0.174 Blueberry Cheesecake (RSP10684)
- 0.196 Liberty Haze (RSP11000)
- 0.208 UP Sunrise (RSP10989)
- 0.222 Durban Poison (RSP11014)
- 0.237 QUEEN JESUS (RSP10105)
- 0.245 Golden Goat 2 (RSP10991)
- 0.245 Recon (RSP10755)
- 0.254 Blueberry Cheesecake (RSP10672)
- 0.255 Blue Dream (RSP11033)
- 0.258 Cherry (RSP11143)
- 0.263 Cbot-2019-001 (RSP11129)
- 0.268 Gold Cracker (RSP11048)
- 0.268 Kimbo Slice (RSP10997)
- 0.272 RKM-2018-020 (RSP11112)
- 0.273 CST (RSP11002)
- 0.274 RKM-2018-031 (RSP11123)
- 0.275 RKM-2018-027 (RSP11119)
- 0.282 Hermaphrodite Research Sample1 (RSP11049)
- 0.282 RKM-2018-005 (RSP11096)
- 0.282 Blueberry Cheesecake (RSP10680)
Most genetically distant strains (All Samples)
- 0.412 80E (RSP11213)
- 0.399 JL yellow (RSP11075)
- 0.395 80E (RSP11211)
- 0.384 80E (RSP11212)
- 0.379 Kush Hemp E1 (RSP11128)
- 0.372 Chem 91 (RSP11185)
- 0.368 JL 3rd Gen Mother (RSP11214)
- 0.365 JL 3rd Gen Father (RSP11196)
- 0.365 Feral (RSP11205)
- 0.362 Tanao Sri 46 (RSP11486)
- 0.362 White Label 1 (RSP11336)
- 0.361 JL 4th Gen 6 (RSP11200)
- 0.357 USO31 (RSP10233)
- 0.351 Abacus (RSP11266)
- 0.351 JL 3rd Gen Mother (RSP11197)
- 0.350 RKM-2018-012 (RSP11103)
- 0.350 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.349 Star Dawg (RSP11352)
- 0.349 JL 4th Gen 5 (RSP11199)
- 0.348 Northern Lights (RSP11501)
Most genetically distant strains (Base Tree)
- 0.386 JL yellow (RSP11075)
- 0.384 Kush Hemp E1 (RSP11128)
- 0.359 Carmagnola (RSP10979)
- 0.358 RKM-2018-026 (RSP11118)
- 0.356 RKM-2018-002 (RSP11093)
- 0.353 Carmagnola (RSP11037)
- 0.349 Feral (RSP10890)
- 0.349 Monoica (RSP10241)
- 0.343 Futura 75 (RSP10664)
- 0.342 Cbot-2019-005 (RSP11133)
- 0.341 Ivory (RSP10668)
- 0.340 Kyrgyz Gold (RSP11054)
- 0.340 RKM-2018-022 (RSP11114)
- 0.338 Lovrin (RSP10658)
- 0.337 Fedora 17 (RSP10661)
- 0.337 Skunk 18 (RSP11038)
- 0.336 Santhica27 (RSP11047)
- 0.334 KYRG-11 (RSP11051)
- 0.334 Skywalker OG (RSP10837)
- 0.325 USO 31 (RSP10981)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 59
- Concordance:
- 39
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 6
- Concordance:
- 6
Blockchain Registration Information
- Transaction ID
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deb2f3d9f39f0e67
b4012ce64c96ce5e 96d7702f0d2f85f3 948048f4158b70d1 - Stamping Certificate
- Download PDF (39.4 KB)
- SHASUM Hash
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e2869076ead761ca
7596b6946389a531 e6a20bf764ac41db 7c38087133c8bfbc