R2
RSP 11615
Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute
General Information
- Sample Name
- CS Sativa
- Accession Date
- July 20, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2a | c.-2_1delATA | p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945632 | ATAT/A |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.557+2T>C | splice donor variant & intron variant | high | contig700 | 2721114 | A/G |
|
|
PKSG-4b | c.554A>G | p.Tyr185Cys | missense variant | moderate | contig700 | 2721119 | T/C |
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.154G>A | p.Val52Ile | missense variant | moderate | contig83 | 1803215 | C/T |
|
FAD2-2 | c.137G>A | p.Gly46Glu | missense variant | moderate | contig83 | 1803232 | C/T |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.766T>C | p.Tyr256His | missense variant | moderate | contig121 | 2841545 | T/C |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.205 R1 (RSP11483)
- 0.207 Tak-HN (RSP11618)
- 0.243 R3 (RSP11616)
- 0.247 R4 (RSP11617)
- 0.269 KYRG-21 (RSP11053)
- 0.277 Jiangji (RSP10653)
- 0.280 KYRG-151 (RSP11052)
- 0.285 Kyrgyz Gold (RSP11054)
- 0.288 Miss X (RSP10999)
- 0.291 Electra (RSP11366)
- 0.292 KYRG-11 (RSP11051)
- 0.294 Tisza (RSP11044)
- 0.295 Lift (RSP11378)
- 0.295 USO 31 (RSP10983)
- 0.297 Tisza (RSP10659)
- 0.299 Tygra (RSP10667)
- 0.299 Santhica27 (RSP11047)
- 0.300 Eletta Campana (RSP11209)
- 0.301 Doug s Varin (RSP11243)
- 0.302 Carmagnola USO 31 (RSP11204)
Nearest genetic relatives (Base Tree)
- 0.290 Kyrgyz Gold (RSP11054)
- 0.293 Jiangji (RSP10653)
- 0.295 KYRG-11 (RSP11051)
- 0.296 Tisza (RSP11044)
- 0.302 Tisza (RSP10659)
- 0.308 Recon (RSP10755)
- 0.311 Santhica27 (RSP11047)
- 0.313 Feral (RSP10890)
- 0.313 Fedora 17 (RSP10661)
- 0.315 Carmagnola (RSP10979)
- 0.318 Futura 75 (RSP10664)
- 0.318 Lovrin (RSP10658)
- 0.323 Tygra (RSP10667)
- 0.332 Kimbo Slice (RSP10997)
- 0.333 Carmagnola (RSP11037)
- 0.337 Durban Poison (RSP11014)
- 0.337 Blueberry Cheesecake (RSP10684)
- 0.337 Monoica (RSP10241)
- 0.338 USO 31 (RSP10981)
- 0.341 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.483 Chem 91 (RSP11185)
- 0.469 Cherry Blossom (RSP11318)
- 0.460 RKM-2018-002 (RSP11093)
- 0.456 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.443 Dave Pineapple (RSP11626)
- 0.441 New York City Deisel (RSP11225)
- 0.437 Ringo s Gift Katie s Cut (RSP11624)
- 0.437 501st OG (RSP11241)
- 0.434 UP Sunset (RSP11256)
- 0.434 Sour D (RSP11343)
- 0.433 Green Crack (RSP11339)
- 0.432 White Label 1 (RSP11336)
- 0.431 Escape Velocity (RSP11165)
- 0.431 Medxotic (RSP11410)
- 0.430 Right Mark (RSP11628)
- 0.430 Mother s Milk No 31 (RSP11623)
- 0.429 Lemon Skunk (RSP11229)
- 0.428 Queen Dream CBG (RSP11287)
- 0.427 GG 4 (RSP11461)
- 0.427 RKM-2018-012 (RSP11103)
Most genetically distant strains (Base Tree)
- 0.477 RKM-2018-002 (RSP11093)
- 0.432 RKM-2018-028 (RSP11120)
- 0.430 RKM-2018-018 (RSP11110)
- 0.429 Sour Raspberry (RSP10551)
- 0.422 Kush Hemp E1 (RSP11128)
- 0.420 Skunk 18 (RSP11038)
- 0.419 Hermaphrodite Research Sample1 (RSP11049)
- 0.416 RKM-2018-009 (RSP11100)
- 0.414 RKM-2018-006 (RSP11097)
- 0.411 JL yellow (RSP11075)
- 0.405 RKM-2018-032 (RSP11124)
- 0.404 Cbot-2019-001 (RSP11129)
- 0.400 RKM-2018-005 (RSP11096)
- 0.396 Italian Kiss (RSP11034)
- 0.396 Blue Dream (RSP11033)
- 0.396 RKM-2018-033 (RSP11125)
- 0.395 RKM-2018-027 (RSP11119)
- 0.392 RKM-2018-026 (RSP11118)
- 0.389 RKM-2018-022 (RSP11114)
- 0.389 Black Beauty (RSP11035)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 86
- Concordance:
- 49
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 2
Blockchain Registration Information
- SHASUM Hash
-
902d18c983d9ded6
620aeefcc8845003 f2e779d718e94600 ee2a091fc1e2deba