R2
RSP 11615
Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute
General Information
- Sample Name
- CS Sativa
- Accession Date
- July 20, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2a | c.-2_1delATA | p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945632 | ATAT/A |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.557+2T>C | splice donor variant & intron variant | high | contig700 | 2721114 | A/G |
|
|
PKSG-4b | c.554A>G | p.Tyr185Cys | missense variant | moderate | contig700 | 2721119 | T/C |
|
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.154G>A | p.Val52Ile | missense variant | moderate | contig83 | 1803215 | C/T |
|
FAD2-2 | c.137G>A | p.Gly46Glu | missense variant | moderate | contig83 | 1803232 | C/T |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.574A>T | p.Met192Leu | missense variant | moderate | contig121 | 2840182 | A/T |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.766T>C | p.Tyr256His | missense variant | moderate | contig121 | 2841545 | T/C |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.188 R1 (RSP11483)
- 0.198 Tak-HN (RSP11618)
- 0.216 R4 (RSP11617)
- 0.216 R3 (RSP11616)
- 0.233 YNN (SRR14708199)
- 0.238 GXI (SRR14708198)
- 0.241 SCN (SRR14708201)
- 0.242 KYRG-151 (RSP11052)
- 0.244 IUL2 (SRR14708253)
- 0.246 Tisza (RSP10659)
- 0.248 IUL3 (SRR14708252)
- 0.249 Jiangji (RSP10653)
- 0.250 QHI (SRR14708202)
- 0.250 KYRG-11 (RSP11051)
- 0.254 IUL1 (SRR14708254)
- 0.256 IMA (SRR14708203)
- 0.257 IBR3 (SRR14708249)
- 0.257 Kyrgyz Gold (RSP11054)
- 0.258 IBR2 (SRR14708250)
- 0.261 KYRG-21 (RSP11053)
Nearest genetic relatives (Base Tree)
- 0.252 Kyrgyz Gold (RSP11054)
- 0.255 Jiangji (RSP10653)
- 0.261 Tisza (RSP10659)
- 0.265 Tygra (RSP10667)
- 0.266 KYRG-11 (RSP11051)
- 0.276 Tisza (RSP11044)
- 0.278 Futura 75 (RSP10664)
- 0.278 Lovrin (RSP10658)
- 0.280 Carmagnola (RSP10979)
- 0.280 Fedora 17 (RSP10661)
- 0.282 Santhica27 (RSP11047)
- 0.284 Feral (RSP10890)
- 0.289 USO 31 (RSP10981)
- 0.291 Carmagnola (RSP11037)
- 0.292 Ivory (RSP10668)
- 0.294 Recon (RSP10755)
- 0.300 Monoica (RSP10241)
- 0.307 Kimbo Slice (RSP10997)
- 0.311 Hermaphrodite ResearchSample2 (RSP11050)
- 0.314 Durban Poison (RSP11014)
Most genetically distant strains (All Samples)
- 0.465 Cherry Blossom (RSP11318)
- 0.436 Cherry Blossom (RSP11323)
- 0.422 Chem 91 (RSP11185)
- 0.418 Cherry Blossom (RSP11300)
- 0.415 Chematonic -Cannatonic x Chemdawg- (RSP11394)
- 0.415 Cherry Blossom (RSP11328)
- 0.415 Cherry Blossom (RSP11312)
- 0.414 Cherry Blossom (RSP11301)
- 0.412 Cherry Blossom (RSP11331)
- 0.410 GG4 (RSP11978)
- 0.410 Unknown--Cherry Wine---001- (RSP11268)
- 0.408 QLE1 (RSP11451)
- 0.407 AVIDEKEL 2 0 (RSP11174)
- 0.404 Wilburs Great Adventure (RSP11727)
- 0.404 Cherry Blossom (RSP11302)
- 0.404 Wife (RSP11148)
- 0.403 QQD2 (RSP11450)
- 0.402 B52 (SRR14708255)
- 0.401 Medxotic (RSP11410)
- 0.401 Cherry Blossom (RSP11322)
Most genetically distant strains (Base Tree)
- 0.400 RKM-2018-002 (RSP11093)
- 0.400 RKM-2018-028 (RSP11120)
- 0.382 Cbot-2019-001 (RSP11129)
- 0.380 JL yellow (RSP11075)
- 0.379 Skunk#18 (RSP11038)
- 0.379 Kush Hemp E1 (RSP11128)
- 0.378 Cbot-2019-005 (RSP11133)
- 0.375 RKM-2018-032 (RSP11124)
- 0.373 RKM-2018-023 (RSP11115)
- 0.372 RKM-2018-009 (RSP11100)
- 0.372 RKM-2018-018 (RSP11110)
- 0.369 Italian Kiss (RSP11034)
- 0.368 Sour Raspberry (RSP10551)
- 0.366 RKM-2018-006 (RSP11097)
- 0.366 Blue Dream (RSP11033)
- 0.365 Hermaphrodite Research Sample1 (RSP11049)
- 0.365 RKM-2018-022 (RSP11114)
- 0.362 RKM-2018-004 (RSP11096)
- 0.362 Blueberry Cheesecake (RSP10672)
- 0.361 RKM-2018-027 (RSP11119)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 86
- Concordance:
- 49
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 2
Blockchain Registration Information
- SHASUM Hash
-
902d18c983d9ded6
620aeefcc8845003 f2e779d718e94600 ee2a091fc1e2deba