R3
RSP 11616
Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute
General Information
- Sample Name
- CS Sativa
- Accession Date
- July 20, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.557+2T>C | splice donor variant & intron variant | high | contig700 | 2721114 | A/G |
|
|
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b |
c.509_510ins |
p.Gly170_Lys |
disruptive inframe insertion | moderate | contig700 | 2721163 |
T/TGGGAAACTT |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.324A>C | p.Glu108Asp | missense variant | moderate | contig700 | 2721349 | T/G |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 | c.218A>G | p.Asn73Ser | missense variant | moderate | contig121 | 2828874 | A/G |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.626A>G | p.Asn209Ser | missense variant | moderate | contig121 | 2830904 | A/G |
|
aPT4 | c.1127C>A | p.Pro376Gln | missense variant & splice region variant | moderate | contig121 | 2833312 | C/A |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 | c.151G>T | p.Ala51Ser | missense variant | moderate | contig95 | 1989818 | G/T |
|
Nearest genetic relatives (All Samples)
- 0.188 Tak-HN (RSP11618)
- 0.227 R4 (RSP11617)
- 0.235 R1 (RSP11483)
- 0.243 R2 (RSP11615)
- 0.257 KYRG-151 (RSP11052)
- 0.259 Santhica 27 (RSP10665)
- 0.264 KYRG-11 (RSP11051)
- 0.265 Kyrgyz Gold (RSP11054)
- 0.267 KYRG-21 (RSP11053)
- 0.271 Carmagnola (RSP10976)
- 0.274 Jiangji (RSP10653)
- 0.275 Tygra (RSP10667)
- 0.277 Tisza (RSP11044)
- 0.279 Tisza (RSP10659)
- 0.281 Miss X (RSP10999)
- 0.288 Carmagnola (RSP10978)
- 0.291 Tisza (RSP11045)
- 0.293 Carmagnola (RSP10979)
- 0.295 Squirrel Tail 31 (RSP11485)
- 0.296 Futura 75 (RSP10664)
Nearest genetic relatives (Base Tree)
- 0.271 Kyrgyz Gold (RSP11054)
- 0.282 Jiangji (RSP10653)
- 0.282 Tisza (RSP11044)
- 0.294 Tisza (RSP10659)
- 0.297 Tygra (RSP10667)
- 0.304 Futura 75 (RSP10664)
- 0.310 KYRG-11 (RSP11051)
- 0.311 Carmagnola (RSP10979)
- 0.316 Carmagnola (RSP11037)
- 0.318 Santhica27 (RSP11047)
- 0.319 USO 31 (RSP10981)
- 0.319 Fedora 17 (RSP10661)
- 0.322 Recon (RSP10755)
- 0.325 Monoica (RSP10241)
- 0.326 Feral (RSP10890)
- 0.331 Ivory (RSP10668)
- 0.331 Durban Poison (RSP11014)
- 0.335 QUEEN JESUS (RSP10105)
- 0.336 Liberty Haze (RSP11000)
- 0.337 RKM-2018-029 (RSP11121)
Most genetically distant strains (All Samples)
- 0.465 Chem 91 (RSP11185)
- 0.451 Cherry Blossom (RSP11318)
- 0.451 RKM-2018-002 (RSP11093)
- 0.449 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.441 Mother s Milk No 31 (RSP11623)
- 0.440 Cherry Blossom (RSP11323)
- 0.439 Ringo s Gift Katie s Cut (RSP11624)
- 0.438 New York City Deisel (RSP11225)
- 0.435 501st OG (RSP11241)
- 0.433 UP Sunset (RSP11256)
- 0.433 Dave Pineapple (RSP11626)
- 0.432 AVIDEKEL 2 0 (RSP11174)
- 0.429 Cherry Blossom (RSP11301)
- 0.429 Right Mark (RSP11628)
- 0.428 Sour D (RSP11343)
- 0.425 Medxotic (RSP11410)
- 0.421 Green Crack (RSP11339)
- 0.421 Glueberry OG (RSP11222)
- 0.421 Danny Noonan (RSP11070)
- 0.421 QLE1 (RSP11451)
Most genetically distant strains (Base Tree)
- 0.473 RKM-2018-002 (RSP11093)
- 0.431 RKM-2018-028 (RSP11120)
- 0.429 RKM-2018-018 (RSP11110)
- 0.426 Kush Hemp E1 (RSP11128)
- 0.418 RKM-2018-032 (RSP11124)
- 0.416 Sour Raspberry (RSP10551)
- 0.416 JL yellow (RSP11075)
- 0.414 Hermaphrodite Research Sample1 (RSP11049)
- 0.410 Cbot-2019-001 (RSP11129)
- 0.407 RKM-2018-006 (RSP11097)
- 0.400 RKM-2018-022 (RSP11114)
- 0.399 Skywalker OG (RSP10837)
- 0.396 RKM-2018-009 (RSP11100)
- 0.396 Blueberry Cheesecake (RSP10672)
- 0.394 RKM-2018-033 (RSP11125)
- 0.393 Skunk 18 (RSP11038)
- 0.392 Blue Dream (RSP11033)
- 0.391 Cbot-2019-006 (RSP11134)
- 0.390 Cbot-2019-005 (RSP11133)
- 0.385 Gold Cracker (RSP11048)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 76
- Concordance:
- 50
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- SHASUM Hash
-
cab3445ca1f245eb
e5cefb68dca63f89 78aac71ff4dbae63 406ab757a2504083