Advanced Strain Search

Tiger Tail (78)

RSP 11619

Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute

General Information

Sample Name
CS Indica
Accession Date
July 20, 2020
Reported Plant Sex
unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.23%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0497
male female RSP11619

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.76C>A p.Pro26Thr missense variant moderate contig380 289205

IGV: Start, Jump

G/T
NGS:
0.004
C90:
0.000
aPT4

UniProt

c.80A>G p.Lys27Arg missense variant moderate contig121 2828736

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
aPT4

UniProt

c.517A>T p.Ile173Leu missense variant & splice region variant moderate contig121 2830795

IGV: Start, Jump

A/T
NGS:
0.022
C90:
0.000
aPT4

UniProt

c.634C>A p.Pro212Thr missense variant moderate contig121 2830912

IGV: Start, Jump

C/A
NGS:
0.009
C90:
0.000
aPT4

UniProt

c.757G>T p.Val253Leu missense variant moderate contig121 2831364

IGV: Start, Jump

G/T
NGS:
0.039
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.220A>G p.Ile74Val missense variant moderate contig121 2835927

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.019
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.157 Squirrel Tail 31 (RSP11485)
  2. 0.205 Tanao Sri-white 79 (RSP11620)
  3. 0.211 Tanao Sri-white 80 (RSP11621)
  4. 0.214 Squirrel Tail 81 (RSP11622)
  5. 0.215 Tiger Tail 30 (RSP11484)
  6. 0.273 Tanao Sri 46 (RSP11486)
  7. 0.278 Tak-HN (RSP11618)
  8. 0.280 Recon (RSP10755)
  9. 0.294 Lift (RSP11378)
  10. 0.298 KYRG-151 (RSP11052)
  11. 0.303 Electra (RSP11366)
  12. 0.305 Miss X (RSP10999)
  13. 0.305 Santhica 27 (RSP10665)
  14. 0.305 KYRG-11 (RSP11051)
  15. 0.307 Jiangji (RSP10653)
  16. 0.310 Cherry Blossom (RSP11317)
  17. 0.310 JL X NSPM1 8 (RSP11470)
  18. 0.311 Serious Happiness (RSP10763)
  19. 0.311 Doug s Varin (RSP11243)
  20. 0.312 R3 (RSP11616)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.281 Recon (RSP10755)
  2. 0.305 KYRG-11 (RSP11051)
  3. 0.306 Jiangji (RSP10653)
  4. 0.318 UP Sunrise (RSP10989)
  5. 0.329 Liberty Haze (RSP11000)
  6. 0.334 Kyrgyz Gold (RSP11054)
  7. 0.338 Tisza (RSP10659)
  8. 0.339 Futura 75 (RSP10664)
  9. 0.339 Durban Poison (RSP11014)
  10. 0.340 Gold Cracker (RSP11048)
  11. 0.343 Kimbo Slice (RSP10997)
  12. 0.346 Carmagnola (RSP11037)
  13. 0.348 Fedora 17 (RSP10661)
  14. 0.349 Tygra (RSP10667)
  15. 0.349 RKM-2018-031 (RSP11123)
  16. 0.351 Ivory (RSP10668)
  17. 0.352 Monoica (RSP10241)
  18. 0.352 Lovrin (RSP10658)
  19. 0.353 Tisza (RSP11044)
  20. 0.355 Carmagnola (RSP10979)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.504 Chem 91 (RSP11185)
  2. 0.487 RKM-2018-002 (RSP11093)
  3. 0.472 Super Sour Diesel (RSP11191)
  4. 0.471 Mother s Milk No 31 (RSP11623)
  5. 0.464 Cherry Blossom (RSP11323)
  6. 0.457 RKM-2018-012 (RSP11103)
  7. 0.456 Chematonic Cannatonic x Chemdawg (RSP11394)
  8. 0.456 RKM-2018-004 (RSP11095)
  9. 0.455 501st OG (RSP11241)
  10. 0.453 Green Crack (RSP11339)
  11. 0.452 Abacus (RSP11266)
  12. 0.451 Right Mark (RSP11628)
  13. 0.449 New York City Deisel (RSP11225)
  14. 0.448 RKM-2018-005 (RSP11096)
  15. 0.445 Cherry Blossom (RSP11318)
  16. 0.443 Sour Tsunami x Cataract Ku (RSP11183)
  17. 0.443 Mothers Milk 5 (RSP11186)
  18. 0.440 RKM-2018-009 (RSP11100)
  19. 0.440 Banana OG (RSP11498)
  20. 0.436 Sour D (RSP11343)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.509 RKM-2018-002 (RSP11093)
  2. 0.453 RKM-2018-005 (RSP11096)
  3. 0.449 RKM-2018-009 (RSP11100)
  4. 0.440 Kush Hemp E1 (RSP11128)
  5. 0.438 RKM-2018-032 (RSP11124)
  6. 0.432 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.432 RKM-2018-028 (RSP11120)
  8. 0.428 RKM-2018-026 (RSP11118)
  9. 0.428 Skywalker OG (RSP10837)
  10. 0.428 RKM-2018-033 (RSP11125)
  11. 0.427 Blueberry Cheesecake (RSP10680)
  12. 0.427 Sour Raspberry (RSP10551)
  13. 0.422 RKM-2018-018 (RSP11110)
  14. 0.411 Pie Hoe (RSP11073)
  15. 0.410 Cbot-2019-005 (RSP11133)
  16. 0.408 JL yellow (RSP11075)
  17. 0.407 RKM-2018-022 (RSP11114)
  18. 0.405 Hermaphrodite ResearchSample2 (RSP11050)
  19. 0.405 Blue Dream (RSP11033)
  20. 0.399 Skunk 18 (RSP11038)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448688
Overlapping SNPs:
84
Concordance:
62

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495156
Overlapping SNPs:
8
Concordance:
7

Blockchain Registration Information

SHASUM Hash
f46d32467106e51b2803db9830786fc798d58b6f161be4ee290d44e182239896
QR code for RSP11619

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