Tiger Tail (78)
RSP 11619
Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute
General Information
- Sample Name
- CS Indica
- Accession Date
- July 20, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1945202 | A/C |
|
PKSG-2a | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1945203 | T/A |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1951450 | A/C |
|
PKSG-2b | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1951451 | T/A |
|
PKSG-2b | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1951471 | G/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.76C>A | p.Pro26Thr | missense variant | moderate | contig380 | 289205 | G/T |
|
aPT4 | c.80A>G | p.Lys27Arg | missense variant | moderate | contig121 | 2828736 | A/G |
|
aPT4 | c.517A>T | p.Ile173Leu | missense variant & splice region variant | moderate | contig121 | 2830795 | A/T |
|
aPT4 | c.634C>A | p.Pro212Thr | missense variant | moderate | contig121 | 2830912 | C/A |
|
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig121 | 2835927 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.157 Squirrel Tail 31 (RSP11485)
- 0.205 Tanao Sri-white 79 (RSP11620)
- 0.211 Tanao Sri-white 80 (RSP11621)
- 0.214 Squirrel Tail 81 (RSP11622)
- 0.215 Tiger Tail 30 (RSP11484)
- 0.273 Tanao Sri 46 (RSP11486)
- 0.278 Tak-HN (RSP11618)
- 0.280 Recon (RSP10755)
- 0.294 Lift (RSP11378)
- 0.298 KYRG-151 (RSP11052)
- 0.303 Electra (RSP11366)
- 0.305 Miss X (RSP10999)
- 0.305 Santhica 27 (RSP10665)
- 0.305 KYRG-11 (RSP11051)
- 0.307 Jiangji (RSP10653)
- 0.310 Cherry Blossom (RSP11317)
- 0.310 JL X NSPM1 8 (RSP11470)
- 0.311 Serious Happiness (RSP10763)
- 0.311 Doug s Varin (RSP11243)
- 0.312 R3 (RSP11616)
Nearest genetic relatives (Base Tree)
- 0.281 Recon (RSP10755)
- 0.305 KYRG-11 (RSP11051)
- 0.306 Jiangji (RSP10653)
- 0.318 UP Sunrise (RSP10989)
- 0.329 Liberty Haze (RSP11000)
- 0.334 Kyrgyz Gold (RSP11054)
- 0.338 Tisza (RSP10659)
- 0.339 Futura 75 (RSP10664)
- 0.339 Durban Poison (RSP11014)
- 0.340 Gold Cracker (RSP11048)
- 0.343 Kimbo Slice (RSP10997)
- 0.346 Carmagnola (RSP11037)
- 0.348 Fedora 17 (RSP10661)
- 0.349 Tygra (RSP10667)
- 0.349 RKM-2018-031 (RSP11123)
- 0.351 Ivory (RSP10668)
- 0.352 Monoica (RSP10241)
- 0.352 Lovrin (RSP10658)
- 0.353 Tisza (RSP11044)
- 0.355 Carmagnola (RSP10979)
Most genetically distant strains (All Samples)
- 0.504 Chem 91 (RSP11185)
- 0.487 RKM-2018-002 (RSP11093)
- 0.472 Super Sour Diesel (RSP11191)
- 0.471 Mother s Milk No 31 (RSP11623)
- 0.464 Cherry Blossom (RSP11323)
- 0.457 RKM-2018-012 (RSP11103)
- 0.456 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.456 RKM-2018-004 (RSP11095)
- 0.455 501st OG (RSP11241)
- 0.453 Green Crack (RSP11339)
- 0.452 Abacus (RSP11266)
- 0.451 Right Mark (RSP11628)
- 0.449 New York City Deisel (RSP11225)
- 0.448 RKM-2018-005 (RSP11096)
- 0.445 Cherry Blossom (RSP11318)
- 0.443 Sour Tsunami x Cataract Ku (RSP11183)
- 0.443 Mothers Milk 5 (RSP11186)
- 0.440 RKM-2018-009 (RSP11100)
- 0.440 Banana OG (RSP11498)
- 0.436 Sour D (RSP11343)
Most genetically distant strains (Base Tree)
- 0.509 RKM-2018-002 (RSP11093)
- 0.453 RKM-2018-005 (RSP11096)
- 0.449 RKM-2018-009 (RSP11100)
- 0.440 Kush Hemp E1 (RSP11128)
- 0.438 RKM-2018-032 (RSP11124)
- 0.432 Hermaphrodite Research Sample1 (RSP11049)
- 0.432 RKM-2018-028 (RSP11120)
- 0.428 RKM-2018-026 (RSP11118)
- 0.428 Skywalker OG (RSP10837)
- 0.428 RKM-2018-033 (RSP11125)
- 0.427 Blueberry Cheesecake (RSP10680)
- 0.427 Sour Raspberry (RSP10551)
- 0.422 RKM-2018-018 (RSP11110)
- 0.411 Pie Hoe (RSP11073)
- 0.410 Cbot-2019-005 (RSP11133)
- 0.408 JL yellow (RSP11075)
- 0.407 RKM-2018-022 (RSP11114)
- 0.405 Hermaphrodite ResearchSample2 (RSP11050)
- 0.405 Blue Dream (RSP11033)
- 0.399 Skunk 18 (RSP11038)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 84
- Concordance:
- 62
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 8
- Concordance:
- 7
Blockchain Registration Information
- SHASUM Hash
-
f46d32467106e51b
2803db9830786fc7 98d58b6f161be4ee 290d44e182239896