Tanao Sri-white (79)
RSP 11620
Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute
General Information
- Sample Name
- CS Indica
- Accession Date
- July 20, 2020
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
GPPs1 |
c.845_848del |
p.Glu282fs | frameshift variant | high | contig676 | 169629 | TGAAA/T |
|
GPPs1 | c.896A>G | p.Asn299Ser | missense variant | moderate | contig676 | 169772 | A/G |
|
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2a | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1945149 | C/T |
|
PKSG-2a | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1945150 | A/C |
|
PKSG-2a | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1945160 | A/G |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1945202 | A/C |
|
PKSG-2a | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1945203 | T/A |
|
PKSG-2a | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1945223 | G/C |
|
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.718T>A | p.Phe240Ile | missense variant | moderate | contig700 | 1950920 | A/T |
|
PKSG-2b | c.241G>A | p.Val81Met | missense variant | moderate | contig700 | 1951397 | C/T |
|
PKSG-2b | c.240T>G | p.Asp80Glu | missense variant | moderate | contig700 | 1951398 | A/C |
|
PKSG-2b | c.230T>C | p.Val77Ala | missense variant | moderate | contig700 | 1951408 | A/G | |
PKSG-2b | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1951414 | T/C | |
PKSG-2b | c.188T>G | p.Ile63Ser | missense variant | moderate | contig700 | 1951450 | A/C |
|
PKSG-2b | c.187A>T | p.Ile63Phe | missense variant | moderate | contig700 | 1951451 | T/A |
|
PKSG-2b | c.167C>G | p.Thr56Ser | missense variant | moderate | contig700 | 1951471 | G/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
aPT4 | c.218A>G | p.Asn73Ser | missense variant | moderate | contig121 | 2828874 | A/G |
|
aPT4 | c.439T>A | p.Ser147Thr | missense variant | moderate | contig121 | 2830634 | T/A |
|
aPT4 | c.626A>G | p.Asn209Ser | missense variant | moderate | contig121 | 2830904 | A/G |
|
aPT4 | c.1127C>A | p.Pro376Gln | missense variant & splice region variant | moderate | contig121 | 2833312 | C/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.220A>G | p.Ile74Val | missense variant | moderate | contig121 | 2835927 | A/G | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.106 Tanao Sri-white 80 (RSP11621)
- 0.179 Squirrel Tail 31 (RSP11485)
- 0.188 Tiger Tail 30 (RSP11484)
- 0.194 Squirrel Tail 81 (RSP11622)
- 0.205 Tiger Tail 78 (RSP11619)
- 0.241 Tanao Sri 46 (RSP11486)
- 0.293 Recon (RSP10755)
- 0.301 Tak-HN (RSP11618)
- 0.308 Blue Dream (RSP11017)
- 0.309 Super Blue Dream (RSP11011)
- 0.309 Doug s Varin (RSP11243)
- 0.310 Black Jack (RSP10603)
- 0.311 Serious Happiness (RSP10763)
- 0.313 KYRG-11 (RSP11051)
- 0.315 JL X NSPM1 8 (RSP11470)
- 0.315 Liberty Haze (RSP11000)
- 0.316 Kimbo Slice (RSP10997)
- 0.317 JL 4th Gen 7 (RSP11153)
- 0.318 Lift (RSP11378)
- 0.319 Feral (RSP10892)
Nearest genetic relatives (Base Tree)
- 0.283 Recon (RSP10755)
- 0.300 Liberty Haze (RSP11000)
- 0.308 Jiangji (RSP10653)
- 0.316 KYRG-11 (RSP11051)
- 0.326 Kimbo Slice (RSP10997)
- 0.326 Blueberry Cheesecake (RSP10684)
- 0.328 Durban Poison (RSP11014)
- 0.331 Tygra (RSP10667)
- 0.335 Tisza (RSP11044)
- 0.339 RKM-2018-031 (RSP11123)
- 0.340 USO 31 (RSP10981)
- 0.346 Fedora 17 (RSP10661)
- 0.347 RKM-2018-027 (RSP11119)
- 0.347 UP Sunrise (RSP10989)
- 0.348 Kyrgyz Gold (RSP11054)
- 0.348 CST (RSP11002)
- 0.350 Carmagnola (RSP10979)
- 0.351 Gold Cracker (RSP11048)
- 0.355 Futura 75 (RSP10664)
- 0.355 Feral (RSP10890)
Most genetically distant strains (All Samples)
- 0.473 Chem 91 (RSP11185)
- 0.461 RKM-2018-002 (RSP11093)
- 0.452 Unknown- Cherry Wine - 001 (RSP11268)
- 0.448 RKM-2018-012 (RSP11103)
- 0.444 Cherry Blossom (RSP11301)
- 0.444 Abacus (RSP11266)
- 0.442 Cherry Blossom (RSP11323)
- 0.442 Cherry Blossom (RSP11318)
- 0.441 Right Mark (RSP11628)
- 0.440 Mother s Milk No 31 (RSP11623)
- 0.437 Danny Noonan (RSP11070)
- 0.437 Kush Hemp E1 (RSP11128)
- 0.436 New York City Deisel (RSP11225)
- 0.434 Chematonic Cannatonic x Chemdawg (RSP11394)
- 0.433 Sour Raspberry (RSP10551)
- 0.432 Super Sour Diesel (RSP11191)
- 0.432 501st OG (RSP11241)
- 0.430 Red Eye OG (RSP11190)
- 0.428 RKM-2018-004 (RSP11095)
- 0.427 Medxotic (RSP11410)
Most genetically distant strains (Base Tree)
- 0.463 RKM-2018-002 (RSP11093)
- 0.450 Sour Raspberry (RSP10551)
- 0.450 Kush Hemp E1 (RSP11128)
- 0.430 RKM-2018-009 (RSP11100)
- 0.429 Skywalker OG (RSP10837)
- 0.422 RKM-2018-026 (RSP11118)
- 0.421 Hermaphrodite Research Sample1 (RSP11049)
- 0.418 RKM-2018-005 (RSP11096)
- 0.416 Cbot-2019-005 (RSP11133)
- 0.416 RKM-2018-033 (RSP11125)
- 0.410 Blueberry Cheesecake (RSP10680)
- 0.408 RKM-2018-032 (RSP11124)
- 0.404 JL yellow (RSP11075)
- 0.403 RKM-2018-018 (RSP11110)
- 0.402 Cbot-2019-006 (RSP11134)
- 0.400 RKM-2018-034 (RSP11126)
- 0.399 RKM-2018-028 (RSP11120)
- 0.395 Blue Dream (RSP11033)
- 0.393 RKM-2018-022 (RSP11114)
- 0.392 Italian Kiss (RSP11034)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 83
- Concordance:
- 60
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- SHASUM Hash
-
1708c2a99156a84c
3698315c05543726 632d11b75f0cb970 d31554b35aed9a3b