Tanao Sri-white (79)

RSP 11620

Grower: Plant Genomic Laboratory, Medicinal Plant Research Institute

General Information

Sample Name
CS Indica
Accession Date
July 20, 2020
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.23%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0964
male female RSP11620

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)

GPPs1

UniProt

c.845_848delAAAG p.Glu282fs frameshift variant high contig676 169629

IGV: Start, Jump

TGAAA/T
NGS:
0.118
C90:
0.000
GPPs1

UniProt

c.896A>G p.Asn299Ser missense variant moderate contig676 169772

IGV: Start, Jump

A/G
NGS:
0.046
C90:
0.000
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1945223

IGV: Start, Jump

G/C
NGS:
0.075
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.218A>G p.Asn73Ser missense variant moderate contig121 2828874

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.000
aPT4

UniProt

c.439T>A p.Ser147Thr missense variant moderate contig121 2830634

IGV: Start, Jump

T/A
NGS:
0.015
C90:
0.000
aPT4

UniProt

c.626A>G p.Asn209Ser missense variant moderate contig121 2830904

IGV: Start, Jump

A/G
NGS:
0.035
C90:
0.000
aPT4

UniProt

c.1127C>A p.Pro376Gln missense variant & splice region variant moderate contig121 2833312

IGV: Start, Jump

C/A
NGS:
0.018
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.220A>G p.Ile74Val missense variant moderate contig121 2835927

IGV: Start, Jump

A/G
NGS:
0.018
C90:
0.019
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
aPT1

UniProt

c.864C>G p.Asn288Lys missense variant moderate contig121 2842407

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.062
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.106 Tanao Sri-white 80 (RSP11621)
  2. 0.179 Squirrel Tail 31 (RSP11485)
  3. 0.188 Tiger Tail 30 (RSP11484)
  4. 0.194 Squirrel Tail 81 (RSP11622)
  5. 0.205 Tiger Tail 78 (RSP11619)
  6. 0.241 Tanao Sri 46 (RSP11486)
  7. 0.293 Recon (RSP10755)
  8. 0.301 Tak-HN (RSP11618)
  9. 0.308 Blue Dream (RSP11017)
  10. 0.309 Super Blue Dream (RSP11011)
  11. 0.309 Doug s Varin (RSP11243)
  12. 0.310 Black Jack (RSP10603)
  13. 0.311 Serious Happiness (RSP10763)
  14. 0.313 KYRG-11 (RSP11051)
  15. 0.315 JL X NSPM1 8 (RSP11470)
  16. 0.315 Liberty Haze (RSP11000)
  17. 0.316 Kimbo Slice (RSP10997)
  18. 0.317 JL 4th Gen 7 (RSP11153)
  19. 0.318 Lift (RSP11378)
  20. 0.319 Feral (RSP10892)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.283 Recon (RSP10755)
  2. 0.300 Liberty Haze (RSP11000)
  3. 0.308 Jiangji (RSP10653)
  4. 0.316 KYRG-11 (RSP11051)
  5. 0.326 Kimbo Slice (RSP10997)
  6. 0.326 Blueberry Cheesecake (RSP10684)
  7. 0.328 Durban Poison (RSP11014)
  8. 0.331 Tygra (RSP10667)
  9. 0.335 Tisza (RSP11044)
  10. 0.339 RKM-2018-031 (RSP11123)
  11. 0.340 USO 31 (RSP10981)
  12. 0.346 Fedora 17 (RSP10661)
  13. 0.347 RKM-2018-027 (RSP11119)
  14. 0.347 UP Sunrise (RSP10989)
  15. 0.348 Kyrgyz Gold (RSP11054)
  16. 0.348 CST (RSP11002)
  17. 0.350 Carmagnola (RSP10979)
  18. 0.351 Gold Cracker (RSP11048)
  19. 0.355 Futura 75 (RSP10664)
  20. 0.355 Feral (RSP10890)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.473 Chem 91 (RSP11185)
  2. 0.461 RKM-2018-002 (RSP11093)
  3. 0.452 Unknown- Cherry Wine - 001 (RSP11268)
  4. 0.448 RKM-2018-012 (RSP11103)
  5. 0.444 Cherry Blossom (RSP11301)
  6. 0.444 Abacus (RSP11266)
  7. 0.442 Cherry Blossom (RSP11323)
  8. 0.442 Cherry Blossom (RSP11318)
  9. 0.441 Right Mark (RSP11628)
  10. 0.440 Mother s Milk No 31 (RSP11623)
  11. 0.437 Danny Noonan (RSP11070)
  12. 0.437 Kush Hemp E1 (RSP11128)
  13. 0.436 New York City Deisel (RSP11225)
  14. 0.434 Chematonic Cannatonic x Chemdawg (RSP11394)
  15. 0.433 Sour Raspberry (RSP10551)
  16. 0.432 Super Sour Diesel (RSP11191)
  17. 0.432 501st OG (RSP11241)
  18. 0.430 Red Eye OG (RSP11190)
  19. 0.428 RKM-2018-004 (RSP11095)
  20. 0.427 Medxotic (RSP11410)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.463 RKM-2018-002 (RSP11093)
  2. 0.450 Sour Raspberry (RSP10551)
  3. 0.450 Kush Hemp E1 (RSP11128)
  4. 0.430 RKM-2018-009 (RSP11100)
  5. 0.429 Skywalker OG (RSP10837)
  6. 0.422 RKM-2018-026 (RSP11118)
  7. 0.421 Hermaphrodite Research Sample1 (RSP11049)
  8. 0.418 RKM-2018-005 (RSP11096)
  9. 0.416 Cbot-2019-005 (RSP11133)
  10. 0.416 RKM-2018-033 (RSP11125)
  11. 0.410 Blueberry Cheesecake (RSP10680)
  12. 0.408 RKM-2018-032 (RSP11124)
  13. 0.404 JL yellow (RSP11075)
  14. 0.403 RKM-2018-018 (RSP11110)
  15. 0.402 Cbot-2019-006 (RSP11134)
  16. 0.400 RKM-2018-034 (RSP11126)
  17. 0.399 RKM-2018-028 (RSP11120)
  18. 0.395 Blue Dream (RSP11033)
  19. 0.393 RKM-2018-022 (RSP11114)
  20. 0.392 Italian Kiss (RSP11034)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346975
Overlapping SNPs:
83
Concordance:
60

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495180
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

SHASUM Hash
1708c2a99156a84c3698315c05543726632d11b75f0cb970d31554b35aed9a3b
QR code for RSP11620

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