Advanced Strain Search

Mother's Milk No. 31

RSP 11623

Grower: HendRx Farms

General Information

Sample Name
mm31-/7-20
Accession Date
July 28, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.02%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0448
male female RSP11623

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.198A>C p.Lys66Asn missense variant moderate contig121 2828854

IGV: Start, Jump

A/C
NGS:
0.044
C90:
0.000
aPT4

UniProt

c.216A>T p.Lys72Asn missense variant moderate contig121 2828872

IGV: Start, Jump

A/T
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.626A>G p.Asn209Ser missense variant moderate contig121 2830904

IGV: Start, Jump

A/G
NGS:
0.035
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.160A>C p.Thr54Pro missense variant moderate contig121 2835867

IGV: Start, Jump

A/C
NGS:
0.086
C90:
0.048
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.670T>A p.Ser224Thr missense variant moderate contig121 2840278

IGV: Start, Jump

T/A
NGS:
0.077
C90:
0.000
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.092 Mothers Milk 5 (RSP11186)
  2. 0.175 RKM-2018-002 (RSP11093)
  3. 0.176 501st OG (RSP11241)
  4. 0.180 JL Cross 11 (RSP11512)
  5. 0.187 Chem 91 (RSP11185)
  6. 0.189 Super Sour Diesel (RSP11191)
  7. 0.189 Headcheese (RSP11192)
  8. 0.196 JL Cross 10 (RSP11511)
  9. 0.203 Tahoe OG (RSP11189)
  10. 0.205 SHERBERT (RSP11355)
  11. 0.207 Star Dawg (RSP11352)
  12. 0.210 GG 4 (RSP11461)
  13. 0.210 East Coast Sour Diesel (RSP10243)
  14. 0.213 Domnesia (RSP11184)
  15. 0.216 Rugburn OG (RSP11353)
  16. 0.220 RKM-2018-017 (RSP11109)
  17. 0.221 RKM-2018-021 (RSP11113)
  18. 0.222 RKM-2018-032 (RSP11124)
  19. 0.224 RKM-2018-012 (RSP11103)
  20. 0.225 NSPM1 (RSP11362)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.180 RKM-2018-002 (RSP11093)
  2. 0.228 RKM-2018-032 (RSP11124)
  3. 0.232 RKM-2018-009 (RSP11100)
  4. 0.242 RKM-2018-005 (RSP11096)
  5. 0.246 Skywalker OG (RSP10837)
  6. 0.247 Blueberry Cheesecake (RSP10684)
  7. 0.252 Blueberry Cheesecake (RSP10680)
  8. 0.260 Hermaphrodite ResearchSample2 (RSP11050)
  9. 0.267 Pie Hoe (RSP11073)
  10. 0.270 RKM-2018-026 (RSP11118)
  11. 0.272 Gold Cracker (RSP11048)
  12. 0.273 RKM-2018-020 (RSP11112)
  13. 0.277 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.286 Durban Poison (RSP11014)
  15. 0.289 UP Sunrise (RSP10989)
  16. 0.290 Liberty Haze (RSP11000)
  17. 0.293 RKM-2018-033 (RSP11125)
  18. 0.297 RKM-2018-034 (RSP11126)
  19. 0.308 Sour Raspberry (RSP10551)
  20. 0.311 Blue Dream (RSP11033)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.471 Tiger Tail 78 (RSP11619)
  2. 0.469 Tanao Sri-white 80 (RSP11621)
  3. 0.465 Squirrel Tail 81 (RSP11622)
  4. 0.461 JL 3rd Gen Father (RSP11196)
  5. 0.458 Cherry Blossom (RSP11314)
  6. 0.457 Tanao Sri 46 (RSP11486)
  7. 0.452 Tiger Tail 30 (RSP11484)
  8. 0.450 CS (RSP11208)
  9. 0.449 Cherry Blossom (RSP11311)
  10. 0.448 80E (RSP11213)
  11. 0.446 Unknown- Cherry Wine - 001 (RSP11268)
  12. 0.443 Feral (RSP10892)
  13. 0.441 R3 (RSP11616)
  14. 0.441 Cherry Blossom (RSP11274)
  15. 0.441 Cherry Blossom (RSP11317)
  16. 0.440 Tanao Sri-white 79 (RSP11620)
  17. 0.440 USO 31 (RSP10983)
  18. 0.437 R4 (RSP11617)
  19. 0.437 Squirrel Tail 31 (RSP11485)
  20. 0.437 Feral (RSP11205)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.444 JL yellow (RSP11075)
  2. 0.431 Ivory (RSP10668)
  3. 0.427 USO 31 (RSP10981)
  4. 0.426 Futura 75 (RSP10664)
  5. 0.425 Cbot-2019-005 (RSP11133)
  6. 0.420 Santhica27 (RSP11047)
  7. 0.419 Fedora 17 (RSP10661)
  8. 0.419 Monoica (RSP10241)
  9. 0.419 Feral (RSP10890)
  10. 0.419 Carmagnola (RSP11037)
  11. 0.413 Lovrin (RSP10658)
  12. 0.407 KYRG-11 (RSP11051)
  13. 0.403 RKM-2018-022 (RSP11114)
  14. 0.403 Black Beauty (RSP11035)
  15. 0.399 Cherry (RSP11142)
  16. 0.397 Carmagnola (RSP10979)
  17. 0.396 Cherry (RSP11143)
  18. 0.393 RKM-2018-019 (RSP11111)
  19. 0.393 Jiangji (RSP10653)
  20. 0.387 Tygra (RSP10667)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347108
Overlapping SNPs:
88
Concordance:
77

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495226
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

SHASUM Hash
0c7ba4ab06477e205300414d38cbfd3cc9e002c885e3d0b64bfb8e99922cfb86
QR code for RSP11623

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