Ringo's Gift (Katie's Cut)

RSP 11624

Grower: HendRx Farms

General Information

Sample Name
RG-K-7-20
Accession Date
July 28, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.87%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0386
male female RSP11624

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

GPPs1

UniProt

c.596T>A p.Leu199His missense variant moderate contig676 168845

IGV: Start, Jump

T/A
NGS:
0.002
C90:
0.000
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1944616

IGV: Start, Jump

C/T
NGS:
0.123
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1945223

IGV: Start, Jump

G/C
NGS:
0.075
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.718T>A p.Phe240Ile missense variant moderate contig700 1950920

IGV: Start, Jump

A/T
NGS:
0.114
C90:
0.000
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1951450

IGV: Start, Jump

A/C
NGS:
0.118
C90:
0.000
PKSG-2b

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1951451

IGV: Start, Jump

T/A
NGS:
0.116
C90:
0.000
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.170 Wife (RSP11148)
  2. 0.198 Cbot-2019-001 (RSP11129)
  3. 0.225 2nd Gen Cherry (RSP11141)
  4. 0.231 UP Sunrise (RSP10989)
  5. 0.235 WO DC (RSP11413)
  6. 0.239 Queen Dream CBG (RSP11283)
  7. 0.241 AVIDEKEL 2 0 (RSP11174)
  8. 0.244 Super Blue Dream (RSP11011)
  9. 0.244 FL30 (RSP11361)
  10. 0.246 EREZ USA (RSP11170)
  11. 0.248 Midnight (RSP10941)
  12. 0.248 Queen Dream CBG (RSP11296)
  13. 0.250 Cherry Blossom (RSP11325)
  14. 0.253 Electra (RSP11366)
  15. 0.254 Lemon Skunk (RSP11229)
  16. 0.254 Cherry (RSP11143)
  17. 0.258 Queen Dream (RSP11291)
  18. 0.259 Cherry Wine (RSP11145)
  19. 0.260 Joy (RSP11380)
  20. 0.261 Blue Dream (RSP11006)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.205 Cbot-2019-001 (RSP11129)
  2. 0.247 UP Sunrise (RSP10989)
  3. 0.270 Cherry (RSP11143)
  4. 0.279 Liberty Haze (RSP11000)
  5. 0.285 Durban Poison (RSP11014)
  6. 0.290 RKM-2018-023 (RSP11115)
  7. 0.291 RKM-2018-018 (RSP11110)
  8. 0.292 RKM-2018-028 (RSP11120)
  9. 0.307 RKM-2018-027 (RSP11119)
  10. 0.310 Gold Cracker (RSP11048)
  11. 0.311 Blue Dream (RSP11033)
  12. 0.316 RKM-2018-006 (RSP11097)
  13. 0.319 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.322 Cbot-2019-004 (RSP11132)
  15. 0.323 Blueberry Cheesecake (RSP10684)
  16. 0.323 CST (RSP11002)
  17. 0.324 Italian Kiss (RSP11034)
  18. 0.324 Blueberry Cheesecake (RSP10672)
  19. 0.324 RKM-2018-020 (RSP11112)
  20. 0.327 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.475 RKM-2018-026 (RSP11118)
  2. 0.472 80E (RSP11211)
  3. 0.468 80E (RSP11212)
  4. 0.463 Star Dawg (RSP11352)
  5. 0.462 Feral (RSP11205)
  6. 0.461 Right Mark (RSP11628)
  7. 0.457 80E (RSP11213)
  8. 0.452 Red Eye OG (RSP11190)
  9. 0.451 Carmagnola (RSP11202)
  10. 0.451 CS (RSP11208)
  11. 0.441 Feral (RSP11206)
  12. 0.440 R1 (RSP11483)
  13. 0.440 RKM-2018-012 (RSP11103)
  14. 0.439 R3 (RSP11616)
  15. 0.438 Flo (RSP11232)
  16. 0.437 R2 (RSP11615)
  17. 0.437 RKM-2018-034 (RSP11126)
  18. 0.435 Deadhead OG (RSP11463)
  19. 0.435 Carmaleonte (RSP11207)
  20. 0.435 Carmagnola (RSP11037)

Most genetically distant strains (Base Tree)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.477 RKM-2018-026 (RSP11118)
  2. 0.449 RKM-2018-034 (RSP11126)
  3. 0.449 Carmagnola (RSP11037)
  4. 0.443 Feral (RSP10890)
  5. 0.438 Santhica27 (RSP11047)
  6. 0.437 RKM-2018-019 (RSP11111)
  7. 0.434 Carmagnola (RSP10979)
  8. 0.433 Skywalker OG (RSP10837)
  9. 0.430 Fedora 17 (RSP10661)
  10. 0.428 Tisza (RSP11044)
  11. 0.427 Monoica (RSP10241)
  12. 0.425 Kyrgyz Gold (RSP11054)
  13. 0.423 Lovrin (RSP10658)
  14. 0.412 Pie Hoe (RSP11073)
  15. 0.406 RKM-2018-002 (RSP11093)
  16. 0.405 Futura 75 (RSP10664)
  17. 0.399 RKM-2018-032 (RSP11124)
  18. 0.398 Jiangji (RSP10653)
  19. 0.398 KYRG-11 (RSP11051)
  20. 0.396 USO 31 (RSP10981)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347112
Overlapping SNPs:
86
Concordance:
84

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495251
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

SHASUM Hash
b1d5ddadb3ccaf031ed94fb65a43463d2f7bd671f8c73eb1bfdb04334f40071c
QR code for RSP11624

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