Advanced Strain Search

Eagle Scout T-111

RSP 11625

Grower: HendRx Farms

General Information

Sample Name
ESC-TIII-7-20
Accession Date
July 28, 2020
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.23%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0454
male female RSP11625

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1944395

IGV: Start, Jump

G/A
NGS:
0.015
C90:
0.598
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.188T>A p.Ile63Asn missense variant moderate contig700 1945202

IGV: Start, Jump

A/T
NGS:
0.061
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.35A>C p.Gln12Pro missense variant moderate contig121 2828691

IGV: Start, Jump

A/C
NGS:
0.075
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1111C>A p.Leu371Ile missense variant moderate contig121 2833296

IGV: Start, Jump

C/A
NGS:
0.044
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.189 Arcata Trainwreck (RSP11176)
  2. 0.211 Serious Happiness (RSP10763)
  3. 0.230 Rest (RSP11377)
  4. 0.232 Domnesia (RSP11184)
  5. 0.239 RKM-2018-019 (RSP11111)
  6. 0.240 Lift (RSP11378)
  7. 0.241 Blue Dream (RSP11010)
  8. 0.241 RINGO S ANGEL (RSP10085)
  9. 0.241 Doug s Varin (RSP11243)
  10. 0.242 Wedding Cake x MAC (RSP11464)
  11. 0.242 North Traveler (RSP11163)
  12. 0.243 JABBA S STASH (RSP11348)
  13. 0.244 Kimbo Slice (RSP10997)
  14. 0.247 Tahoe OG (RSP11189)
  15. 0.248 Trump x Trump (RSP11466)
  16. 0.250 Strawberry Cough (RSP11356)
  17. 0.250 JL Cross 6 (RSP11507)
  18. 0.251 Blueberry Cheesecake (RSP10684)
  19. 0.251 Electra (RSP11366)
  20. 0.252 Blue Dream (RSP11017)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.241 RKM-2018-019 (RSP11111)
  2. 0.246 Kimbo Slice (RSP10997)
  3. 0.246 The Gift (RSP10988)
  4. 0.257 Blueberry Cheesecake (RSP10684)
  5. 0.261 RKM-2018-005 (RSP11096)
  6. 0.272 Liberty Haze (RSP11000)
  7. 0.274 QUEEN JESUS (RSP10105)
  8. 0.276 RKM-2018-034 (RSP11126)
  9. 0.280 Blueberry Cheesecake (RSP10680)
  10. 0.281 RKM-2018-032 (RSP11124)
  11. 0.289 Golden Goat 2 (RSP10991)
  12. 0.290 RKM-2018-033 (RSP11125)
  13. 0.293 Recon (RSP10755)
  14. 0.294 Sour Raspberry (RSP10551)
  15. 0.295 Tygra (RSP10667)
  16. 0.295 RKM-2018-026 (RSP11118)
  17. 0.296 Hermaphrodite ResearchSample2 (RSP11050)
  18. 0.299 RKM-2018-029 (RSP11121)
  19. 0.302 RKM-2018-009 (RSP11100)
  20. 0.307 Tisza (RSP10659)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.458 Cherry Blossom (RSP11328)
  2. 0.440 Cherry Blossom (RSP11323)
  3. 0.436 JL yellow (RSP11075)
  4. 0.435 Tanao Sri 46 (RSP11486)
  5. 0.431 Cherry Blossom (RSP11309)
  6. 0.427 Unknown- Cherry Wine - 001 (RSP11268)
  7. 0.423 Unknown- Cherry Wine - 003 (RSP11270)
  8. 0.422 JL 3rd Gen Mother (RSP11214)
  9. 0.419 Ringo s Gift Katie s Cut (RSP11624)
  10. 0.416 Cherry Blossom (RSP11301)
  11. 0.416 AVIDEKEL USA (RSP11169)
  12. 0.414 Unknown- Cherry Wine - 002 (RSP11269)
  13. 0.412 80E (RSP11213)
  14. 0.410 Tanao Sri-white 80 (RSP11621)
  15. 0.404 JL 3rd Gen Mother (RSP11197)
  16. 0.402 Cherry Blossom (RSP11306)
  17. 0.402 Lemon Skunk (RSP11229)
  18. 0.401 Cherry Blossom (RSP11298)
  19. 0.401 Chematonic Cannatonic x Chemdawg (RSP11394)
  20. 0.397 Tiger Tail 30 (RSP11484)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.435 JL yellow (RSP11075)
  2. 0.384 Cbot-2019-001 (RSP11129)
  3. 0.378 Cherry (RSP11143)
  4. 0.376 RKM-2018-006 (RSP11097)
  5. 0.365 RKM-2018-027 (RSP11119)
  6. 0.364 Cherry (RSP11142)
  7. 0.363 RKM-2018-002 (RSP11093)
  8. 0.359 Monoica (RSP10241)
  9. 0.357 Cbot-2019-005 (RSP11133)
  10. 0.357 Carmagnola (RSP10979)
  11. 0.357 Feral (RSP10890)
  12. 0.352 Santhica27 (RSP11047)
  13. 0.349 RKM-2018-028 (RSP11120)
  14. 0.346 Skunk 18 (RSP11038)
  15. 0.346 Italian Kiss (RSP11034)
  16. 0.344 Lovrin (RSP10658)
  17. 0.343 Futura 75 (RSP10664)
  18. 0.343 RKM-2018-003 (RSP11094)
  19. 0.343 Blue Dream (RSP11033)
  20. 0.342 USO 31 (RSP10981)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346387
Overlapping SNPs:
88
Concordance:
53

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495200
Overlapping SNPs:
8
Concordance:
8

Blockchain Registration Information

SHASUM Hash
546885c9919e19965c0627691b1b2d5eef464d575fe1ae6da8d16320368647ec
QR code for RSP11625

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